Non-Coding RNA Search

Ss1.1-Pig4-TMW8033N15.3

Sequence:


               
               ATCTGTGTTTTAACAGTTCTGTATGTTTCGGTGCCTTTTATGCTTGAGTTCACATCGGAT
ATTGAAATCTGCAGTCGGGCGCTGATCCAGACTTCCATTGTGTTCCCGGCTTAGGACGGA
AGGAAAAGAGCCGGACATTCCTCTGTACAAGACTCTGCAGACAGTCGGGCCATCCCATGC
TAGAACCTACACCACATTTGTGTGCTTCAAGGGAGAGAGAATCGGCTGTGGGAAAGGACC
AAGTATTCAGCAAGCGGAAATGGGAGCAGCAATGGATGCACTTGAAAAATATAACTTTCC
CCAGATGGCCCATCAGAAGCGGTTCATTGAACGGAAGTACAGACAAGAGTTAAAAGAAAT
GAGGTGGGAAAGAGAGCATCAAGAGAAAGAGCCAGATGAGACTGAAGACATAAAGAAGTA
AAGGAGGGCACGGAAGTGGTGGCGTATTTACTTGCCTAATAACTGTGACTGTTGCCCATC
GGAGACTTAGCCTAGTTTTCCTGGAGACAGTGAATGAAGTGTGCCCATTGAAATAAAACA
CAAAGTCAAATCACTCTTGTTGTTTTACTGATCTCACGTTCGGATTTTAGCTGGATGGTC
TTTGTTACAAAATATTTGATTTCTCTCCTATTTAATGGAAAACCACTTGGGTGAATGTGC
ATACTCCCTATATTTTGTTCTTTAAATAATAAAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTGTGTTTTAACAGTTCTGTATGTTTCGGTGCCTTTTATGCTTGAGTTCACATCGGAT
ATTGAAATCTGCAGTCGGGCGCTGATCCAGACTTCCATTGTGTTCCCGGCTTAGGACGGA
AGGAAAAGAGCCGGACATTCCTCTGTACAAGACTCTGCAGACAGTCGGGCCATCCCATGC
TAGAACCTACACCACATTTGTGTGCTTCAAGGGAGAGAGAATCGGCTGTGGGAAAGGACC
AAGTATTCAGCAAGCGGAAATGGGAGCAGCAATGGATGCACTTGAAAAATATAACTTTCC
CCAGATGGCCCATCAGAAGCGGTTCATTGAACGGAAGTACAGACAAGAGTTAAAAGAAAT
GAGGTGGGAAAGAGAGCATCAAGAGAAAGAGCCAGATGAGACTGAAGACATAAAGAAGTA
AAGGAGGGCACGGAAGTGGTGGCGTATTTACTTGCCTAATAACTGTGACTGTTGCCCATC
GGAGACTTAGCCTAGTTTTCCTGGAGACAGTGAATGAAGTGTGCCCATTGAAATAAAACA
CAAAGTCAAATCACTCTTGTTGTTTTACTGATCTCACGTTCGGATTTTAGCTGGATGGTC
TTTGTTACAAAATATTTGATTTCTCTCCTATTTAATGGAAAACCACTTGGGTGAATGTGC
ATACTCCCTATATTTTGTTCTTTAAATAATAAAATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12834450|dbj|BAB22917.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12834450|dbj|BAB22917.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               291-696, gnl|bosTau2|chr20 (27490539-27490942)
               

               
               291-696, gnl|Hg17|chr5 (31437426-31437027)
               

               
               291-696, gnl|Mm7|chr15 (12994954-12995334)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               291-696, gnl|bosTau2|chr20 (27490539-27490942)
               

               
               291-696, gnl|Hg17|chr5 (31437426-31437027)
               

               
               291-696, gnl|Mm7|chr15 (12994954-12995334)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ton (0.1755)
               

               
               cki (0.165235)
               

               
               lyg (0.133103)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               cki (0.165235)
               

               
               lyg (0.133103)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	291-696, gnl\|bosTau2\|chr20 (27490539-27490942)
	291-696, gnl\|Hg17\|chr5 (31437426-31437027)
	291-696, gnl\|Mm7\|chr15 (12994954-12995334)

	ton (0.1755)
	cki (0.165235)
	lyg (0.133103)
	jca (0.11396)
	nbm (0.0993246)