Ss1.1-Pig4-TMW8033N17.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTTTTTTTGGTGGTCAATAATTATTTATTGAAAAAAAAACGGACCGCC CCCCAGACTCCAGCTGAAACAACCCCTTCACACACACAACCCACACAGACGGCAACTCCA GATGCGCTGAGCAAGAGGCGACGCTGCTGCCACCCTCTGCCCGCAGCCTCTGGGAGGGCT AGTAGAAATCTTCCTGGTCGGAGTCGGGCCCTGTGCCTTGCTGGTTCTGAATCTGACTTT GTTTCCGGTACAGACAGGCCACCTGAGCGCTGGTGGTGGCCTCTTCCGGCTTCTTGTCGT CACGGACTCGAATAAACCGAGGGAAGCGAAGGGAGATGCCCTTCTCGCTGTCCACCAGGC CCCGGGCGGCGGGGTAGATGGGGGAGAGGGAGAGGTCGGCGCACTTCACCTCCCACACGG CGCTGGGGTCCAGCCAGTGGTCGGGGGCCACAGCCCCGTCGGCGCGAACGTAGGAGCGGG GGGCGGGCAGCACCAGGGCCTGGAGGCTCTGGTGATGCGCCTCCAGCTCCTCGTCGCTGA AGCCAGTTCCGAGCTTGCATATGGCCTGCAGCTCCTCACTCTCCTCATCATAGGAGGCCA GCAGGAAGCCCCCGTACCGACCGGCCCTCTTTCCCCGGCCTAGGTAGGCGCCGATCACCA CCAGGTCCAGGGTGTCGCTCACGCCATCAAGGTAGTCCTTCTTCAGCTTGAGCCAGTTGT GCGACCTCTTGGCGATCTCGTAGGTGGCATCGACATCCAGGGTCTTCACCATCAGGCCCT CGCAGGAGTCTTTCACTGACTGCTCCAGGAACTCGGCGATCTGGTCCGTGTCCTTGGTGT CCAGGGAGGTGGCGAAGACAAACTCGCCCTCCGTCTCCACGAAGTTCTCCCGGAGCAGCT GCCGCCGTCGGGAAAGGGGCTCCCGAACCAGGGACTCTCCGTTGAGGTAGATGAGGTCGA AGGCGTAGAGACACACCTGCACCTGGATCTCTGCCGCGTCCACCTCCTTGCGTTTGCGGG TGGTGAGCACTTGGAATGGCTGGATCTGCTTCTTTTCCCGGTCCCAAGCCACGGCTTCCG CATCCAGAATGAAGGATGTGACGGATGGGAGTTTAATCTTGGGGATGCGGCTGATGATGT CGGGGTACCTTCCGGTGTTGTCTTCCTGGTTCCTGCTGAAGATCTTCACCTCGCCGCCTT CCATAACGTGGATCTGTGCTCTCTGCCCATCGTATTTGTACTCGCAGGTGAAAGCTGCCT CCTCAAAGCGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTTTTTTTGGTGGTCAATAATTATTTATTGAAAAAAAAACGGACCGCC CCCCAGACTCCAGCTGAAACAACCCCTTCACACACACAACCCACACAGACGGCAACTCCA GATGCGCTGAGCAAGAGGCGACGCTGCTGCCACCCTCTGCCCGCAGCCTCTGGGAGGGCT AGTAGAAATCTTCCTGGTCGGAGTCGGGCCCTGTGCCTTGCTGGTTCTGAATCTGACTTT GTTTCCGGTACAGACAGGCCACCTGAGCGCTGGTGGTGGCCTCTTCCGGCTTCTTGTCGT CACGGACTCGAATAAACCGAGGGAAGCGAAGGGAGATGCCCTTCTCGCTGTCCACCAGGC CCCGGGCGGCGGGGTAGATGGGGGAGAGGGAGAGGTCGGCGCACTTCACCTCCCACACGG CGCTGGGGTCCAGCCAGTGGTCGGGGGCCACAGCCCCGTCGGCGCGAACGTAGGAGCGGG GGGCGGGCAGCACCAGGGCCTGGAGGCTCTGGTGATGCGCCTCCAGCTCCTCGTCGCTGA AGCCAGTTCCGAGCTTGCATATGGCCTGCAGCTCCTCACTCTCCTCATCATAGGAGGCCA GCAGGAAGCCCCCGTACCGACCGGCCCTCTTTCCCCGGCCTAGGTAGGCGCCGATCACCA CCAGGTCCAGGGTGTCGCTCACGCCATCAAGGTAGTCCTTCTTCAGCTTGAGCCAGTTGT GCGACCTCTTGGCGATCTCGTAGGTGGCATCGACATCCAGGGTCTTCACCATCAGGCCCT CGCAGGAGTCTTTCACTGACTGCTCCAGGAACTCGGCGATCTGGTCCGTGTCCTTGGTGT CCAGGGAGGTGGCGAAGACAAACTCGCCCTCCGTCTCCACGAAGTTCTCCCGGAGCAGCT GCCGCCGTCGGGAAAGGGGCTCCCGAACCAGGGACTCTCCGTTGAGGTAGATGAGGTCGA AGGCGTAGAGACACACCTGCACCTGGATCTCTGCCGCGTCCACCTCCTTGCGTTTGCGGG TGGTGAGCACTTGGAATGGCTGGATCTGCTTCTTTTCCCGGTCCCAAGCCACGGCTTCCG CATCCAGAATGAAGGATGTGACGGATGGGAGTTTAATCTTGGGGATGCGGCTGATGATGT CGGGGTACCTTCCGGTGTTGTCTTCCTGGTTCCTGCTGAAGATCTTCACCTCGCCGCCTT CCATAACGTGGATCTGTGCTCTCTGCCCATCGTATTTGTACTCGCAGGTGAAAGCTGCCT CCTCAAAGCGTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 790-908, - strand, RNAz p=0.615947 | |
| 790-904, - strand, RNAz p=0.629691 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 790-908, - strand, RNAz p=0.615947 | |
| 790-904, - strand, RNAz p=0.629691 |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 21-267, gnl|bosTau2|chr18 (47908690-47908447) | |
| 21-267, gnl|Hg17|chr19 (53310516-53310806) | |
| 21-267, gnl|Mm7|chr7 (11898431-11898198) | |
| 353-505, gnl|bosTau2|chr18 (47906752-47906600) | |
| 353-505, gnl|canFam2|chr1 (111027518-111027383) | |
| 353-505, gnl|danRer3|chr2 (39450586-39450451) | |
| 353-505, gnl|dasNov1|scaffold_52296 (12007-11887) | |
| 353-505, gnl|echTel1|scaffold_294744 (7106-7241) | |
| 353-505, gnl|galGal2|chrUn (127606578-127606443) | |
| 353-505, gnl|hg17|chr19 (53312702-53312837) | |
| 353-505, gnl|Hg17|chr19 (53312704-53312856) | |
| 353-505, gnl|mm7|chr7 (11896270-11896135) | |
| 353-505, gnl|Mm7|chr7 (11896266-11896114) | |
| 353-505, gnl|monDom2|scaffold_105 (3917205-3917067) | |
| 353-505, gnl|panTro1|chr20 (50580429-50580564) | |
| 353-505, gnl|rheMac2|chr19 (54398208-54398343) | |
| 353-505, gnl|rn3|chr1 (73843609-73843474) | |
| 353-505, gnl|tetNig1|chrUn_random (108756331-108756196) | |
| 353-505, gnl|xenTro1|scaffold_1074 (176452-176587) | |
| 790-936, gnl|bosTau2|chr18 (47904777-47904631) | |
| 790-936, gnl|canFam2|chr1 (111022923-111022763) | |
| 790-936, gnl|danRer3|chr2 (39442992-39442843) | |
| 790-936, gnl|dasNov1|scaffold_257366 (845-714) | |
| 790-936, gnl|echTel1|scaffold_294744 (11997-12160) | |
| 790-936, gnl|fr1|chrUn (293557203-293557057) | |
| 790-936, gnl|galGal2|chrUn (127605790-127605638) | |
| 790-936, gnl|hg17|chr19 (53318244-53318407) | |
| 790-936, gnl|Hg17|chr19 (53318243-53318389) | |
| 790-936, gnl|loxAfr1|scaffold_208576 (475-309) | |
| 790-936, gnl|mm7|chr7 (11893064-11892912) | |
| 790-936, gnl|Mm7|chr7 (11893063-11892917) | |
| 790-936, gnl|monDom2|scaffold_105 (3916245-3916094) | |
| 790-936, gnl|oryCun1|scaffold_170297 (16562-16411) | |
| 790-936, gnl|panTro1|chr20 (50586137-50586300) | |
| 790-936, gnl|rheMac2|chr19 (54404143-54404306) | |
| 790-936, gnl|rn3|chr1 (73840281-73840130) | |
| 790-936, gnl|tetNig1|chrUn_random (170463353-170463207) | |
| 790-936, gnl|xenTro1|scaffold_1074 (178655-178801) | |
| 1006-1119, gnl|bosTau2|chr18 (47903652-47903539) | |
| 1006-1119, gnl|canFam2|chr1 (111020107-111019983) | |
| 1006-1119, gnl|danRer3|chr2 (39440484-39440393) | |
| 1006-1119, gnl|dasNov1|scaffold_52296 (4224-4100) | |
| 1006-1119, gnl|echTel1|scaffold_294744 (12884-13008) | |
| 1006-1119, gnl|fr1|chrUn (293556489-293556388) | |
| 1006-1119, gnl|galGal2|chrUn (127605270-127605179) | |
| 1006-1119, gnl|hg17|chr19 (53322974-53323098) | |
| 1006-1119, gnl|Hg17|chr19 (53322978-53323091) | |
| 1006-1119, gnl|mm7|chr7 (11890310-11890186) | |
| 1006-1119, gnl|Mm7|chr7 (11890304-11890191) | |
| 1006-1119, gnl|monDom2|scaffold_105 (3915457-3915333) | |
| 1006-1119, gnl|oryCun1|scaffold_170297 (14323-14199) | |
| 1006-1119, gnl|panTro1|chr20 (50590864-50590988) | |
| 1006-1119, gnl|rheMac2|chr19 (54408475-54408599) | |
| 1006-1119, gnl|rn3|chr1 (73837106-73836982) | |
| 1006-1119, gnl|tetNig1|chrUn_random (112358406-112358498) | |
| 1006-1119, gnl|xenTro1|scaffold_1074 (179784-179904) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 21-267, gnl|bosTau2|chr18 (47908690-47908447) | |
| 21-267, gnl|Hg17|chr19 (53310516-53310806) | |
| 21-267, gnl|Mm7|chr7 (11898431-11898198) | |
| 353-505, gnl|bosTau2|chr18 (47906752-47906600) | |
| 353-505, gnl|canFam2|chr1 (111027518-111027383) | |
| 353-505, gnl|danRer3|chr2 (39450586-39450451) | |
| 353-505, gnl|dasNov1|scaffold_52296 (12007-11887) | |
| 353-505, gnl|echTel1|scaffold_294744 (7106-7241) | |
| 353-505, gnl|galGal2|chrUn (127606578-127606443) | |
| 353-505, gnl|hg17|chr19 (53312702-53312837) | |
| 353-505, gnl|Hg17|chr19 (53312704-53312856) | |
| 353-505, gnl|mm7|chr7 (11896270-11896135) | |
| 353-505, gnl|Mm7|chr7 (11896266-11896114) | |
| 353-505, gnl|monDom2|scaffold_105 (3917205-3917067) | |
| 353-505, gnl|panTro1|chr20 (50580429-50580564) | |
| 353-505, gnl|rheMac2|chr19 (54398208-54398343) | |
| 353-505, gnl|rn3|chr1 (73843609-73843474) | |
| 353-505, gnl|tetNig1|chrUn_random (108756331-108756196) | |
| 353-505, gnl|xenTro1|scaffold_1074 (176452-176587) | |
| 790-936, gnl|bosTau2|chr18 (47904777-47904631) | |
| 790-936, gnl|canFam2|chr1 (111022923-111022763) | |
| 790-936, gnl|danRer3|chr2 (39442992-39442843) | |
| 790-936, gnl|dasNov1|scaffold_257366 (845-714) | |
| 790-936, gnl|echTel1|scaffold_294744 (11997-12160) | |
| 790-936, gnl|fr1|chrUn (293557203-293557057) | |
| 790-936, gnl|galGal2|chrUn (127605790-127605638) | |
| 790-936, gnl|hg17|chr19 (53318244-53318407) | |
| 790-936, gnl|Hg17|chr19 (53318243-53318389) | |
| 790-936, gnl|loxAfr1|scaffold_208576 (475-309) | |
| 790-936, gnl|mm7|chr7 (11893064-11892912) | |
| 790-936, gnl|Mm7|chr7 (11893063-11892917) | |
| 790-936, gnl|monDom2|scaffold_105 (3916245-3916094) | |
| 790-936, gnl|oryCun1|scaffold_170297 (16562-16411) | |
| 790-936, gnl|panTro1|chr20 (50586137-50586300) | |
| 790-936, gnl|rheMac2|chr19 (54404143-54404306) | |
| 790-936, gnl|rn3|chr1 (73840281-73840130) | |
| 790-936, gnl|tetNig1|chrUn_random (170463353-170463207) | |
| 790-936, gnl|xenTro1|scaffold_1074 (178655-178801) | |
| 1006-1119, gnl|bosTau2|chr18 (47903652-47903539) | |
| 1006-1119, gnl|canFam2|chr1 (111020107-111019983) | |
| 1006-1119, gnl|danRer3|chr2 (39440484-39440393) | |
| 1006-1119, gnl|dasNov1|scaffold_52296 (4224-4100) | |
| 1006-1119, gnl|echTel1|scaffold_294744 (12884-13008) | |
| 1006-1119, gnl|fr1|chrUn (293556489-293556388) | |
| 1006-1119, gnl|galGal2|chrUn (127605270-127605179) | |
| 1006-1119, gnl|hg17|chr19 (53322974-53323098) | |
| 1006-1119, gnl|Hg17|chr19 (53322978-53323091) | |
| 1006-1119, gnl|mm7|chr7 (11890310-11890186) | |
| 1006-1119, gnl|Mm7|chr7 (11890304-11890191) | |
| 1006-1119, gnl|monDom2|scaffold_105 (3915457-3915333) | |
| 1006-1119, gnl|oryCun1|scaffold_170297 (14323-14199) | |
| 1006-1119, gnl|panTro1|chr20 (50590864-50590988) | |
| 1006-1119, gnl|rheMac2|chr19 (54408475-54408599) | |
| 1006-1119, gnl|rn3|chr1 (73837106-73836982) | |
| 1006-1119, gnl|tetNig1|chrUn_random (112358406-112358498) | |
| 1006-1119, gnl|xenTro1|scaffold_1074 (179784-179904) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| cst (0.280073) | |
| clu (0.239292) | |
| nep (0.183925) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| pty (0.142714) | |
| nca (0.136874) | |
| cly (0.120642) | |
| eru (0.120048) | |
| med (0.116252) | |
| nbm (0.0993246) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cst (0.280073) | |
| clu (0.239292) | |
| nep (0.183925) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| pty (0.142714) | |
| nca (0.136874) | |
| cly (0.120642) | |
| eru (0.120048) | |
| med (0.116252) | |
| nbm (0.0993246) |