Ss1.1-Pig4-TMW8033O03.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGGAGACAGAAGTTCCAGATTATATCTCCCGGGGTTGCTCTTGTCGCACAGCGGAGCGT GTCCCGAGCAGCGCCAGCAGGCGTCAGAGGCGGACGCCATGGCCACAACCTTCCGGGCGA GCGAGCATCAGCATATCCGCTACAACCCGCTGCAAGATGAATGGGTGCTGGTCTCAGCTC ACCGAATGAAGCGGCCCTGGCAGGGGCAGGTAGAACCTCCGCTTCTGACGTCAGTACCCC GCCATGATCCCCACAACCCTCTGTGTCCGGGGGCCACACGGGCCAATGGAGAGGTGAATC CTCACTATGAAGGCACCTTCTTGTTTGACAACGACTTCCCAGCTCTGCAGCCTGATGCCC CTAGTCCAGGACCCAGTGATCACCCCCTTTTCCAAGCAGAGGCTGCTCGAGGAGTTTGTA AGGTCATGTGCTTCCACCCCTGGTCGGATGTGACACTGCCACTCATGTCAGTCCCTGAGA TCCGAGCTGTCGTTGATGCCTGGGCCTCAGTCACAGAGGAGCTGGGTGCCCAGTACCCTT GGGTGCAGATCTTTGAAAACAAAGGAGCCATGATGGGCTGTTCCAACCCCCACCCCCACT GCCAGGTGTGGGCCAGCAGTTTCCTGCCAGATGTTGCCCAGCGTGAGGAGCGATCTCAGC GGGCCTACCAGAGTCAGCATGGAGAGCCCCTGCTAATGGAGTATGGCCGCCAGGAGCTGC TCAGGAAGGAACGTCTGGTCCTAACCAGTGAGCACTGGTTAGTACTGGTCCCCTTCTGGG CAGTGTGGCCCTTCCAGACACTACTGCTGCCCCGTCGACATGTGCGGCGGCTGCCTGAGC TGACCCCCTCTGAACGTGATGATCTAGCCTCCATCATGAAGAAGCTCTTGACCAAGTATG ACAACCTATTTGAGACATCCTTTCCCTACTCCATGGGCTGGCACGGTGCTCCCACAGGAT CAGAGGCTGGAGCCGACTGGGACCACTGGCAGCTCCATGCTCATTATTACCCTCCACTCC TGCGCTCTGCCACAGTCCGAAAATTCATGGTTGGCTACGAAATGCTTGCCCAGGCTCAGA GGGACCTCACCCCCGAGCAGGCTGCAGAGAGACTCAGGGCACTTCCTGAGGTTCATTACC GCCTGGGGCAGAAGGACAAGGAGACAGCAGCCATTGCCTGACCACACTGACCACAGGGCT TTCTGCCTGAGGGAACAAGGGCCTAGGGTTCGGGCAGATTTGGGGTCAATAAAACTGTGC TTCTCAAACTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGGAGACAGAAGTTCCAGATTATATCTCCCGGGGTTGCTCTTGTCGCACAGCGGAGCGT GTCCCGAGCAGCGCCAGCAGGCGTCAGAGGCGGACGCCATGGCCACAACCTTCCGGGCGA GCGAGCATCAGCATATCCGCTACAACCCGCTGCAAGATGAATGGGTGCTGGTCTCAGCTC ACCGAATGAAGCGGCCCTGGCAGGGGCAGGTAGAACCTCCGCTTCTGACGTCAGTACCCC GCCATGATCCCCACAACCCTCTGTGTCCGGGGGCCACACGGGCCAATGGAGAGGTGAATC CTCACTATGAAGGCACCTTCTTGTTTGACAACGACTTCCCAGCTCTGCAGCCTGATGCCC CTAGTCCAGGACCCAGTGATCACCCCCTTTTCCAAGCAGAGGCTGCTCGAGGAGTTTGTA AGGTCATGTGCTTCCACCCCTGGTCGGATGTGACACTGCCACTCATGTCAGTCCCTGAGA TCCGAGCTGTCGTTGATGCCTGGGCCTCAGTCACAGAGGAGCTGGGTGCCCAGTACCCTT GGGTGCAGATCTTTGAAAACAAAGGAGCCATGATGGGCTGTTCCAACCCCCACCCCCACT GCCAGGTGTGGGCCAGCAGTTTCCTGCCAGATGTTGCCCAGCGTGAGGAGCGATCTCAGC GGGCCTACCAGAGTCAGCATGGAGAGCCCCTGCTAATGGAGTATGGCCGCCAGGAGCTGC TCAGGAAGGAACGTCTGGTCCTAACCAGTGAGCACTGGTTAGTACTGGTCCCCTTCTGGG CAGTGTGGCCCTTCCAGACACTACTGCTGCCCCGTCGACATGTGCGGCGGCTGCCTGAGC TGACCCCCTCTGAACGTGATGATCTAGCCTCCATCATGAAGAAGCTCTTGACCAAGTATG ACAACCTATTTGAGACATCCTTTCCCTACTCCATGGGCTGGCACGGTGCTCCCACAGGAT CAGAGGCTGGAGCCGACTGGGACCACTGGCAGCTCCATGCTCATTATTACCCTCCACTCC TGCGCTCTGCCACAGTCCGAAAATTCATGGTTGGCTACGAAATGCTTGCCCAGGCTCAGA GGGACCTCACCCCCGAGCAGGCTGCAGAGAGACTCAGGGCACTTCCTGAGGTTCATTACC GCCTGGGGCAGAAGGACAAGGAGACAGCAGCCATTGCCTGACCACACTGACCACAGGGCT TTCTGCCTGAGGGAACAAGGGCCTAGGGTTCGGGCAGATTTGGGGTCAATAAAACTGTGC TTCTCAAACTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 727-829, - strand, RNAz p=0.560504 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 727-829, - strand, RNAz p=0.560504 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 123-300, gnl|bosTau2|chr8 (41420717-41420894) | |
| 123-300, gnl|Hg17|chr9 (34637085-34637262) | |
| 123-300, gnl|Mm7|chr4 (41894265-41894442) | |
| 418-556, gnl|bosTau2|chr8 (41421578-41421716) | |
| 418-556, gnl|Hg17|chr9 (34637828-34637966) | |
| 418-556, gnl|Mm7|chr4 (41894986-41895124) | |
| 727-872, gnl|bosTau2|chr8 (41422472-41422616) | |
| 727-872, gnl|canFam2|chr11 (54351617-54351771) | |
| 727-872, gnl|danRer3|chr10 (7316442-7316288) | |
| 727-872, gnl|dasNov1|scaffold_45953 (4123-3969) | |
| 727-872, gnl|galGal2|chrUn (44173296-44173154) | |
| 727-872, gnl|hg17|chr9 (34638746-34638900) | |
| 727-872, gnl|Hg17|chr9 (34638757-34638901) | |
| 727-872, gnl|mm7|chr4 (41895752-41895906) | |
| 727-872, gnl|Mm7|chr4 (41895763-41895907) | |
| 727-872, gnl|monDom2|scaffold_17 (47275505-47275354) | |
| 727-872, gnl|oryCun1|scaffold_206605 (110645-110799) | |
| 727-872, gnl|panTro1|chr11 (35177318-35177472) | |
| 727-872, gnl|rheMac2|chr15 (42875153-42874999) | |
| 727-872, gnl|rn3|chr5 (59187582-59187736) | |
| 727-872, gnl|tetNig1|chrUn_random (107071245-107071387) | |
| 1085-1272, gnl|bosTau2|chr8 (41423589-41423775) | |
| 1085-1272, gnl|Hg17|chr9 (34640350-34640578) | |
| 1085-1272, gnl|Mm7|chr4 (41896792-41896985) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 123-300, gnl|bosTau2|chr8 (41420717-41420894) | |
| 123-300, gnl|Hg17|chr9 (34637085-34637262) | |
| 123-300, gnl|Mm7|chr4 (41894265-41894442) | |
| 418-556, gnl|bosTau2|chr8 (41421578-41421716) | |
| 418-556, gnl|Hg17|chr9 (34637828-34637966) | |
| 418-556, gnl|Mm7|chr4 (41894986-41895124) | |
| 727-872, gnl|bosTau2|chr8 (41422472-41422616) | |
| 727-872, gnl|canFam2|chr11 (54351617-54351771) | |
| 727-872, gnl|danRer3|chr10 (7316442-7316288) | |
| 727-872, gnl|dasNov1|scaffold_45953 (4123-3969) | |
| 727-872, gnl|galGal2|chrUn (44173296-44173154) | |
| 727-872, gnl|hg17|chr9 (34638746-34638900) | |
| 727-872, gnl|Hg17|chr9 (34638757-34638901) | |
| 727-872, gnl|mm7|chr4 (41895752-41895906) | |
| 727-872, gnl|Mm7|chr4 (41895763-41895907) | |
| 727-872, gnl|monDom2|scaffold_17 (47275505-47275354) | |
| 727-872, gnl|oryCun1|scaffold_206605 (110645-110799) | |
| 727-872, gnl|panTro1|chr11 (35177318-35177472) | |
| 727-872, gnl|rheMac2|chr15 (42875153-42874999) | |
| 727-872, gnl|rn3|chr5 (59187582-59187736) | |
| 727-872, gnl|tetNig1|chrUn_random (107071245-107071387) | |
| 1085-1272, gnl|bosTau2|chr8 (41423589-41423775) | |
| 1085-1272, gnl|Hg17|chr9 (34640350-34640578) | |
| 1085-1272, gnl|Mm7|chr4 (41896792-41896985) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| cag (0.302389) | |
| cst (0.280073) | |
| cga (0.279096) | |
| fce (0.271592) | |
| cov (0.264306) | |
| jej (0.197844) | |
| nep (0.183925) | |
| ton (0.1755) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| cki (0.165235) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| eru (0.120048) | |
| med (0.116252) | |
| eje (0.0988338) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.302389) | |
| cst (0.280073) | |
| cga (0.279096) | |
| fce (0.271592) | |
| cov (0.264306) | |
| jej (0.197844) | |
| nep (0.183925) | |
| ton (0.1755) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| cki (0.165235) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| eru (0.120048) | |
| med (0.116252) | |
| eje (0.0988338) |