Ss1.1-Pig4-TMW8033O07.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAACCCCGCCCACCCGGGAGCCCAAGAAAGTGGCAGTGGTCCGCACTCCACCCAAGTCGC CGTCTGCAGCCAAGAGCCGCCTGCAGACTGCCCCCGGGCCCATGCCAGACCTGAAGAACG TCAGGTCCAAGATCGGCTCCACCGAAAACCTGAAACACCAGCCGGGAGGCGGGAAGGTGC AGATAATTAATAAGAAGCTGGATCTTAGCAACGTCCGGTCCAAGATCGGCTCCACCGAAA ATATCAAACACGTGCCAGGAGGCGGCAGTGTGCAAATAGTCTACAAACCAGTGGATCTGA GCAAGGTGACCTCCAAGTGTGGCTCGTTAGGCAACATCCACCATAAGCCAGGAGGTGGCC AGGTGGAAGTAAAATCTGAGAAGCTGGACTTCAAGGATAGAGTCCAGTCGAAGATCGGGT CCCTGGATAACATCACCCACGTCCCTGGCGGAGGGAATAAGAAGATCGAAACCCACAAGC TGACCTTCCGCGAGAACGCCAAAGCCAAGACGGACCACGGGGCGGAGATTGTGTACAAGT CGCCCGTGGTGTCAGGGGACACGTCCCCCAGGCATCTCAGCAATGTCTCCTCTACCGGCA GCATCGACATGGTGGACTCCCCGCAGCTCGCCACGCTCGCCGACGAGGTGTCCGCCTCCC TGGCCAAGCAGGGTTTGTGATCAGGGCCCCGGGGCGGTCAGTAATCGTAGAGAGAGGAGA GTGAGAGTGTGGAAAAAAAAAAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAACCCCGCCCACCCGGGAGCCCAAGAAAGTGGCAGTGGTCCGCACTCCACCCAAGTCGC CGTCTGCAGCCAAGAGCCGCCTGCAGACTGCCCCCGGGCCCATGCCAGACCTGAAGAACG TCAGGTCCAAGATCGGCTCCACCGAAAACCTGAAACACCAGCCGGGAGGCGGGAAGGTGC AGATAATTAATAAGAAGCTGGATCTTAGCAACGTCCGGTCCAAGATCGGCTCCACCGAAA ATATCAAACACGTGCCAGGAGGCGGCAGTGTGCAAATAGTCTACAAACCAGTGGATCTGA GCAAGGTGACCTCCAAGTGTGGCTCGTTAGGCAACATCCACCATAAGCCAGGAGGTGGCC AGGTGGAAGTAAAATCTGAGAAGCTGGACTTCAAGGATAGAGTCCAGTCGAAGATCGGGT CCCTGGATAACATCACCCACGTCCCTGGCGGAGGGAATAAGAAGATCGAAACCCACAAGC TGACCTTCCGCGAGAACGCCAAAGCCAAGACGGACCACGGGGCGGAGATTGTGTACAAGT CGCCCGTGGTGTCAGGGGACACGTCCCCCAGGCATCTCAGCAATGTCTCCTCTACCGGCA GCATCGACATGGTGGACTCCCCGCAGCTCGCCACGCTCGCCGACGAGGTGTCCGCCTCCC TGGCCAAGCAGGGTTTGTGATCAGGGCCCCGGGGCGGTCAGTAATCGTAGAGAGAGGAGA GTGAGAGTGTGGAAAAAAAAAAAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 42-178, - strand, RNAz p=0.982279 | |
| 54-178, - strand, RNAz p=0.975015 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 42-178, - strand, RNAz p=0.982279 | |
| 54-178, - strand, RNAz p=0.975015 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 3-178, gnl|bosTau2|chr19 (41965488-41965313) | |
| 3-178, gnl|canFam2|chr9 (12670592-12670435) | |
| 3-178, gnl|danRer3|chr3 (15264024-15264148) | |
| 3-178, gnl|dasNov1|scaffold_23006 (12686-12843) | |
| 3-178, gnl|echTel1|scaffold_319646 (85446-85603) | |
| 3-178, gnl|fr1|chrUn (184787945-184787785) | |
| 3-178, gnl|galGal2|chr27 (1395264-1395107) | |
| 3-178, gnl|hg17|chr17 (41429648-41429805) | |
| 3-178, gnl|Hg17|chr17 (41429694-41429869) | |
| 3-178, gnl|loxAfr1|scaffold_306 (126405-126580) | |
| 3-178, gnl|mm7|chr11 (104419356-104419513) | |
| 3-178, gnl|Mm7|chr11 (104419402-104419577) | |
| 3-178, gnl|monDom2|scaffold_18 (39244988-39244831) | |
| 3-178, gnl|oryCun1|scaffold_82876 (460-617) | |
| 3-178, gnl|panTro1|chr19 (44804358-44804515) | |
| 3-178, gnl|rheMac2|chr16 (56623039-56623196) | |
| 3-178, gnl|rn3|chr10 (93500370-93500527) | |
| 3-178, gnl|tetNig1|chr2 (1668500-1668657) | |
| 3-178, gnl|xenTro1|scaffold_221 (1456180-1456026) | |
| 463-741, gnl|bosTau2|chr19 (41944814-41944537) | |
| 463-741, gnl|Hg17|chr17 (41457165-41457445) | |
| 463-741, gnl|Mm7|chr11 (104437011-104437296) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-178, gnl|bosTau2|chr19 (41965488-41965313) | |
| 3-178, gnl|canFam2|chr9 (12670592-12670435) | |
| 3-178, gnl|danRer3|chr3 (15264024-15264148) | |
| 3-178, gnl|dasNov1|scaffold_23006 (12686-12843) | |
| 3-178, gnl|echTel1|scaffold_319646 (85446-85603) | |
| 3-178, gnl|fr1|chrUn (184787945-184787785) | |
| 3-178, gnl|galGal2|chr27 (1395264-1395107) | |
| 3-178, gnl|hg17|chr17 (41429648-41429805) | |
| 3-178, gnl|Hg17|chr17 (41429694-41429869) | |
| 3-178, gnl|loxAfr1|scaffold_306 (126405-126580) | |
| 3-178, gnl|mm7|chr11 (104419356-104419513) | |
| 3-178, gnl|Mm7|chr11 (104419402-104419577) | |
| 3-178, gnl|monDom2|scaffold_18 (39244988-39244831) | |
| 3-178, gnl|oryCun1|scaffold_82876 (460-617) | |
| 3-178, gnl|panTro1|chr19 (44804358-44804515) | |
| 3-178, gnl|rheMac2|chr16 (56623039-56623196) | |
| 3-178, gnl|rn3|chr10 (93500370-93500527) | |
| 3-178, gnl|tetNig1|chr2 (1668500-1668657) | |
| 3-178, gnl|xenTro1|scaffold_221 (1456180-1456026) | |
| 463-741, gnl|bosTau2|chr19 (41944814-41944537) | |
| 463-741, gnl|Hg17|chr17 (41457165-41457445) | |
| 463-741, gnl|Mm7|chr11 (104437011-104437296) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.115035) |