Non-Coding RNA Search

Ss1.1-Pig4-TMW8033P01.5

Sequence:


               
               GAAATAAAGTACTGCTGAATTTTTTTTTTTTTTTAGGTGGTGCCAGAATTGAATGTCTCC
ATGTCATTTATTTATATTACCAATACATTCTATTTATGTTCTTTTTGGTCCTTTGAATAT
TTAATATATTGTTAAGTAGGTATAAATCTTGGTATTTGCATTTGCAAAAAGCTATTCAAA
ACTGTCTTCCTAATTGGATGATAAGTAAAAAATATTGAGCTGTCAAGACTATTTAGCTAA
TTGGGAATTAAAAAGTAGAATAGCAAATTATGAGAAAATATAAAGGTTTACAGTTTCACT
ACAATGTAACAAAAGTTAAAAATAATTTAGGCAGATGCATAGTCACTATCTTATGCATCT
TAGAAAAAGTACAGGAAACTGACCTTAAAGTCATACTTAAAAGCCAACTAACTTATGTAC
TTATAATTGTAGAAGATAAATATTATAGAAAACCTAAAAATAATGCTTACCTTGGAATTC
TCAGTTTTAGTTTAGAGATTTTTCAAGTCATATAGAAAAGAGTGAAGGAGTTTAATGATG
CAGTCTTGTCTTCATGCTTCAAGAATTAGCATCTTTCCATGTATTTTCTCTTGAGAAAGA
AATTACAAAAACATTTCACACCAGTATCCTTTAGCTTAAAATTGTTCTGCAGAAAGGGGA
AAGGAGTGTACTTTTATTAGATTAATAATATTTGCATCCAATACACTGAATCTTCCTTTA
GAGGTAAGACTTTAACAGTGACACTGTAAATACTTGGTTTGTTTGGCACTACTGTAAGTT
CTGCTTTTACACAAAGTTTTATGCTTATAAAGCAAAATAAAAACTGTAGTTTCTTGTATG
ATTTTTTTATATAACTCATCCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAATAAAGTACTGCTGAATTTTTTTTTTTTTTTAGGTGGTGCCAGAATTGAATGTCTCC
ATGTCATTTATTTATATTACCAATACATTCTATTTATGTTCTTTTTGGTCCTTTGAATAT
TTAATATATTGTTAAGTAGGTATAAATCTTGGTATTTGCATTTGCAAAAAGCTATTCAAA
ACTGTCTTCCTAATTGGATGATAAGTAAAAAATATTGAGCTGTCAAGACTATTTAGCTAA
TTGGGAATTAAAAAGTAGAATAGCAAATTATGAGAAAATATAAAGGTTTACAGTTTCACT
ACAATGTAACAAAAGTTAAAAATAATTTAGGCAGATGCATAGTCACTATCTTATGCATCT
TAGAAAAAGTACAGGAAACTGACCTTAAAGTCATACTTAAAAGCCAACTAACTTATGTAC
TTATAATTGTAGAAGATAAATATTATAGAAAACCTAAAAATAATGCTTACCTTGGAATTC
TCAGTTTTAGTTTAGAGATTTTTCAAGTCATATAGAAAAGAGTGAAGGAGTTTAATGATG
CAGTCTTGTCTTCATGCTTCAAGAATTAGCATCTTTCCATGTATTTTCTCTTGAGAAAGA
AATTACAAAAACATTTCACACCAGTATCCTTTAGCTTAAAATTGTTCTGCAGAAAGGGGA
AAGGAGTGTACTTTTATTAGATTAATAATATTTGCATCCAATACACTGAATCTTCCTTTA
GAGGTAAGACTTTAACAGTGACACTGTAAATACTTGGTTTGTTTGGCACTACTGTAAGTT
CTGCTTTTACACAAAGTTTTATGCTTATAAAGCAAAATAAAAACTGTAGTTTCTTGTATG
ATTTTTTTATATAACTCATCCACT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-849, gnl|bosTau2|chr14 (18886382-18885571)
               

               
               1-849, gnl|Hg17|chr8 (67935383-67936668)
               

               
               1-849, gnl|Mm7|chr1 (10042314-10043221)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-849, gnl|bosTau2|chr14 (18886382-18885571)
               

               
               1-849, gnl|Hg17|chr8 (67935383-67936668)
               

               
               1-849, gnl|Mm7|chr1 (10042314-10043221)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               lin (0.291206)
               

               
               lnt (0.142308)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.291206)
               

               
               lnt (0.142308)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)

	1-849, gnl\|bosTau2\|chr14 (18886382-18885571)
	1-849, gnl\|Hg17\|chr8 (67935383-67936668)
	1-849, gnl\|Mm7\|chr1 (10042314-10043221)

	lin (0.291206)
	lnt (0.142308)
	ret (0.128733)
	tra (0.123092)
	cbl (0.114797)