Ss1.1-Pig4-TMW8033P13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTAGCGAGCGCCTTCTAGGACAAATTCAAGGACAGAGGAACTCCAAGTGCTCTAAGGAAG ATTGGATAACAAGAAATGCCTAATCAAGATTCTGCTGTGAAAATGATGCCAGAATTCCAG AAAAGTTCAGTTCGCATCAAGAATCCTACAAAAGTAGAAGAAATTATCTGTGGTCTTATC AAAGGAGGAGCTGCCAAACTTCAGGTAATAACAGACTTTGATATGACACTGAGTCGATTT TCCTATAGAGGGAAAAGATGCCCATCATGTCATAATGTCATTGACAACTGTAAGCTAATT ACAGATGAGTGTCGAGAAAAGTTACTACAACTAAAGGAAAAGTATTATGCTATTGAAATT GATCCTGTTCTTACTGTAGAAGAGAAGTACCCTTATATTGTGGAATGGTATACTAAATCA CACGGTCTGCTTATTGAACAGGCTTTACCAAAAGCCAAACTTAAAGAAATTGTGGAAGAA TCTGACATTATGCTCAAGGAAGGATATGAGAATTTCTTTGATAAGCTCCAGCAGTACAAT ATCCCTGTGTTCATATTTTCGGCTGGTATCGGTGATGTGCTAGAGGAGGTTATCCGTCAA GCTGGTGTTTATTATCCAAATGTCAAAGTGGTATCCAACTTCATGGATTTTGATGACAAT GGGCTGCTCAGAGGATTTAAAGGAGAACTAATTCATGTGTTTAACAAACATGATGGTTCC TTGAAGAATACGGAATATTTCAATCAACTAAAAAACAATAGCAACATAATTCTGCTGGGA GACTCCCAAGGGGACTTAAAAATGGCAGACGGAGTAGCCAATGTTGAACACATTCTGAAA ATTGGGTATCTAAACGATAGAGTGGATGAGCTTTTAGAAAAGTACATGGACTCTTATGAT ATTGTTCTAGTAAGAGATGAATCATTGGACGTTGCCAACTCTATCTTACAGAAGATTCTA TAAGTAAGCATTCTTCAAGAAGACCTCTCACTTGTGGGTGCAACTGATACAAGAGCTGCT CATCTGTCTTGCTAAAAGACTATTATTTATAATACATTCTTGCTCTTGAAGTTTCTTCTC TACATTACTGAAGTATTTTCAAATTGGTTGAATCCATCAACTGGAAGCTCCTTTTTCTCC ACCTCTCTCAGCACACTCCTCACTGTTTTTAACAGTAGAAAAAACAAAACAGGAAAAATT TGAAAAATAACGCTACATTTCTAGAGTCAGTTTTGTAGCTTAATGTTATTATGAAGTTTT TGAAGAGTTTTTACATTGGGAAAGCTTGTAGAAGTTTAAAAAGTTTTATGAAATGGTGAA ATAATGTACATGATTTTAAGTGTTGTCATTTTTATAACTTGGCTGAATTATGATGATAGT ATTACCATCTCCTAAAATTTTAGTATGTTTGGTTATTTTGTTTGATGAAAAGCAGTATTT ACCAAAAAATACTGGCACTTGATGTTTGAAAAAATCTATTGGTATCTTCATGTCACTAAA TCATTACAGAATGTTCTATATTGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTAGCGAGCGCCTTCTAGGACAAATTCAAGGACAGAGGAACTCCAAGTGCTCTAAGGAAG ATTGGATAACAAGAAATGCCTAATCAAGATTCTGCTGTGAAAATGATGCCAGAATTCCAG AAAAGTTCAGTTCGCATCAAGAATCCTACAAAAGTAGAAGAAATTATCTGTGGTCTTATC AAAGGAGGAGCTGCCAAACTTCAGGTAATAACAGACTTTGATATGACACTGAGTCGATTT TCCTATAGAGGGAAAAGATGCCCATCATGTCATAATGTCATTGACAACTGTAAGCTAATT ACAGATGAGTGTCGAGAAAAGTTACTACAACTAAAGGAAAAGTATTATGCTATTGAAATT GATCCTGTTCTTACTGTAGAAGAGAAGTACCCTTATATTGTGGAATGGTATACTAAATCA CACGGTCTGCTTATTGAACAGGCTTTACCAAAAGCCAAACTTAAAGAAATTGTGGAAGAA TCTGACATTATGCTCAAGGAAGGATATGAGAATTTCTTTGATAAGCTCCAGCAGTACAAT ATCCCTGTGTTCATATTTTCGGCTGGTATCGGTGATGTGCTAGAGGAGGTTATCCGTCAA GCTGGTGTTTATTATCCAAATGTCAAAGTGGTATCCAACTTCATGGATTTTGATGACAAT GGGCTGCTCAGAGGATTTAAAGGAGAACTAATTCATGTGTTTAACAAACATGATGGTTCC TTGAAGAATACGGAATATTTCAATCAACTAAAAAACAATAGCAACATAATTCTGCTGGGA GACTCCCAAGGGGACTTAAAAATGGCAGACGGAGTAGCCAATGTTGAACACATTCTGAAA ATTGGGTATCTAAACGATAGAGTGGATGAGCTTTTAGAAAAGTACATGGACTCTTATGAT ATTGTTCTAGTAAGAGATGAATCATTGGACGTTGCCAACTCTATCTTACAGAAGATTCTA TAAGTAAGCATTCTTCAAGAAGACCTCTCACTTGTGGGTGCAACTGATACAAGAGCTGCT CATCTGTCTTGCTAAAAGACTATTATTTATAATACATTCTTGCTCTTGAAGTTTCTTCTC TACATTACTGAAGTATTTTCAAATTGGTTGAATCCATCAACTGGAAGCTCCTTTTTCTCC ACCTCTCTCAGCACACTCCTCACTGTTTTTAACAGTAGAAAAAACAAAACAGGAAAAATT TGAAAAATAACGCTACATTTCTAGAGTCAGTTTTGTAGCTTAATGTTATTATGAAGTTTT TGAAGAGTTTTTACATTGGGAAAGCTTGTAGAAGTTTAAAAAGTTTTATGAAATGGTGAA ATAATGTACATGATTTTAAGTGTTGTCATTTTTATAACTTGGCTGAATTATGATGATAGT ATTACCATCTCCTAAAATTTTAGTATGTTTGGTTATTTTGTTTGATGAAAAGCAGTATTT ACCAAAAAATACTGGCACTTGATGTTTGAAAAAATCTATTGGTATCTTCATGTCACTAAA TCATTACAGAATGTTCTATATTGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 105-206, gnl|bosTau2|chr4 (34546458-34546357) | |
| 105-206, gnl|canFam2|chr14 (48047589-48047721) | |
| 105-206, gnl|dasNov1|scaffold_85012 (5177-5308) | |
| 105-206, gnl|echTel1|scaffold_195503 (5436-5336) | |
| 105-206, gnl|fr1|chrUn (96655449-96655562) | |
| 105-206, gnl|galGal2|chr2 (47068394-47068271) | |
| 105-206, gnl|hg17|chr7 (32839660-32839791) | |
| 105-206, gnl|Hg17|chr7 (32839768-32839667) | |
| 105-206, gnl|loxAfr1|scaffold_59356 (38722-38590) | |
| 105-206, gnl|mm7|chr6 (56856157-56856280) | |
| 105-206, gnl|Mm7|chr6 (56856259-56856158) | |
| 105-206, gnl|monDom2|scaffold_210 (615968-616116) | |
| 105-206, gnl|oryCun1|scaffold_201759 (39882-39979) | |
| 105-206, gnl|panTro1|chr6 (33952280-33952411) | |
| 105-206, gnl|rheMac2|chr3 (93138204-93138076) | |
| 105-206, gnl|rn3|chr4 (86125152-86125277) | |
| 105-206, gnl|tetNig1|chrUn_random (41476994-41477098) | |
| 105-206, gnl|xenTro1|scaffold_241 (380644-380773) | |
| 495-661, gnl|bosTau2|chr4 (34539741-34539575) | |
| 495-661, gnl|canFam2|chr14 (48039626-48039817) | |
| 495-661, gnl|echTel1|scaffold_319958 (78541-78350) | |
| 495-661, gnl|fr1|chrUn (96654210-96654384) | |
| 495-661, gnl|galGal2|chr2 (47071624-47071437) | |
| 495-661, gnl|hg17|chr7 (32830269-32830460) | |
| 495-661, gnl|Hg17|chr7 (32830456-32830290) | |
| 495-661, gnl|loxAfr1|scaffold_63824 (483-292) | |
| 495-661, gnl|mm7|chr6 (56848057-56848248) | |
| 495-661, gnl|Mm7|chr6 (56848244-56848078) | |
| 495-661, gnl|monDom2|scaffold_210 (610152-610325) | |
| 495-661, gnl|oryCun1|scaffold_146295 (847-1038) | |
| 495-661, gnl|panTro1|chr6 (33942749-33942940) | |
| 495-661, gnl|rheMac2|chr3 (93147750-93147559) | |
| 495-661, gnl|rn3|chr4 (86116894-86117085) | |
| 495-661, gnl|tetNig1|chrUn_random (41476169-41476358) | |
| 495-661, gnl|xenTro1|scaffold_241 (376256-376459) | |
| 862-1521, gnl|bosTau2|chr4 (34538282-34537607) | |
| 862-1521, gnl|Hg17|chr7 (32827683-32827023) | |
| 862-1521, gnl|Mm7|chr6 (56846428-56845812) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 105-206, gnl|bosTau2|chr4 (34546458-34546357) | |
| 105-206, gnl|canFam2|chr14 (48047589-48047721) | |
| 105-206, gnl|dasNov1|scaffold_85012 (5177-5308) | |
| 105-206, gnl|echTel1|scaffold_195503 (5436-5336) | |
| 105-206, gnl|fr1|chrUn (96655449-96655562) | |
| 105-206, gnl|galGal2|chr2 (47068394-47068271) | |
| 105-206, gnl|hg17|chr7 (32839660-32839791) | |
| 105-206, gnl|Hg17|chr7 (32839768-32839667) | |
| 105-206, gnl|loxAfr1|scaffold_59356 (38722-38590) | |
| 105-206, gnl|mm7|chr6 (56856157-56856280) | |
| 105-206, gnl|Mm7|chr6 (56856259-56856158) | |
| 105-206, gnl|monDom2|scaffold_210 (615968-616116) | |
| 105-206, gnl|oryCun1|scaffold_201759 (39882-39979) | |
| 105-206, gnl|panTro1|chr6 (33952280-33952411) | |
| 105-206, gnl|rheMac2|chr3 (93138204-93138076) | |
| 105-206, gnl|rn3|chr4 (86125152-86125277) | |
| 105-206, gnl|tetNig1|chrUn_random (41476994-41477098) | |
| 105-206, gnl|xenTro1|scaffold_241 (380644-380773) | |
| 495-661, gnl|bosTau2|chr4 (34539741-34539575) | |
| 495-661, gnl|canFam2|chr14 (48039626-48039817) | |
| 495-661, gnl|echTel1|scaffold_319958 (78541-78350) | |
| 495-661, gnl|fr1|chrUn (96654210-96654384) | |
| 495-661, gnl|galGal2|chr2 (47071624-47071437) | |
| 495-661, gnl|hg17|chr7 (32830269-32830460) | |
| 495-661, gnl|Hg17|chr7 (32830456-32830290) | |
| 495-661, gnl|loxAfr1|scaffold_63824 (483-292) | |
| 495-661, gnl|mm7|chr6 (56848057-56848248) | |
| 495-661, gnl|Mm7|chr6 (56848244-56848078) | |
| 495-661, gnl|monDom2|scaffold_210 (610152-610325) | |
| 495-661, gnl|oryCun1|scaffold_146295 (847-1038) | |
| 495-661, gnl|panTro1|chr6 (33942749-33942940) | |
| 495-661, gnl|rheMac2|chr3 (93147750-93147559) | |
| 495-661, gnl|rn3|chr4 (86116894-86117085) | |
| 495-661, gnl|tetNig1|chrUn_random (41476169-41476358) | |
| 495-661, gnl|xenTro1|scaffold_241 (376256-376459) | |
| 862-1521, gnl|bosTau2|chr4 (34538282-34537607) | |
| 862-1521, gnl|Hg17|chr7 (32827683-32827023) | |
| 862-1521, gnl|Mm7|chr6 (56846428-56845812) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| sag (0.730861) | |
| cbl (0.688784) | |
| spl (0.286369) | |
| nbm (0.198649) | |
| nlu (0.191681) | |
| gul (0.177588) | |
| sin (0.174948) | |
| rec (0.17307) | |
| cut (0.169924) | |
| cki (0.165235) | |
| nco (0.161734) | |
| cag (0.151194) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| liv (0.146284) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| ret (0.128733) | |
| jca (0.11396) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sag (0.730861) | |
| cbl (0.688784) | |
| spl (0.286369) | |
| nbm (0.198649) | |
| nlu (0.191681) | |
| gul (0.177588) | |
| sin (0.174948) | |
| rec (0.17307) | |
| cut (0.169924) | |
| cki (0.165235) | |
| nco (0.161734) | |
| cag (0.151194) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| liv (0.146284) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| ret (0.128733) | |
| jca (0.11396) | |
| cty (0.10408) | |
| ldo (0.0970026) |