Non-Coding RNA Search

Ss1.1-Pig4-TMW8033P20.5

Sequence:


               
               CGGGAGCTGCAGTCCCCGCTGCCTGCGCACGGCGGGCTGGCATCGGGCCCGGGGGGAAGC
GGAGCAGGTCTGCTGGTCGAAGTGACGCGGCGGCTCCCGGGGGGAAGCGGAGCAGGTCTG
CTGGTCGAAGTGACGCGGCGGCTCACTCGTGGCAACAATCAGCAGGAGCAGGAGACAGCA
AGGATAGGCCCAGGAAAACGAAGAAATGGAGCAGCCCGTGCAGAACGGAGAGGAAGACCG
CCCTTTGGGAGGGGTCGAAGGCCACCAGCCAGCAGCAAATAGACGGGGACAAGCTCGCCG
ACTTGCCCCTAATTTCCGATGGGCCATACCCAATAGGCAGATCAATGATGGGATGGGTGG
AGATGGAGATGATATGGAAATGTTCATGGAGGAGATGAGAGAAATCAGGAGAAAACTTAG
GGAGCTGCAGTTGAGGAATTGTCTGCGTATCCTTATGGGGGAGCTCTCTAATCACCATGA
CCATCATGATGAATTTTGCCTTATGCCTTGACTCCTGCCATTTTCCATGAGGTTAATACT
GTGATCCCCACTGTTGTTCTCTTTTTCCTTACATTTTCCTGATATGCCTTTACTGATCCA
TTTGCTGTGAACCTTATGTAATTTCCATGTGTCAGGTGGGTTCTGTGTTACCAGCTTCTA
ATTGGAGATTGCCTTGGCACCCAAAGTTTCTGTCAACAGTAGAGTTTCACCCATTTGCAT
GGAAAAATGTAAAGTCAATAAAGCAATTAAAAAGCAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGAGCTGCAGTCCCCGCTGCCTGCGCACGGCGGGCTGGCATCGGGCCCGGGGGGAAGC
GGAGCAGGTCTGCTGGTCGAAGTGACGCGGCGGCTCCCGGGGGGAAGCGGAGCAGGTCTG
CTGGTCGAAGTGACGCGGCGGCTCACTCGTGGCAACAATCAGCAGGAGCAGGAGACAGCA
AGGATAGGCCCAGGAAAACGAAGAAATGGAGCAGCCCGTGCAGAACGGAGAGGAAGACCG
CCCTTTGGGAGGGGTCGAAGGCCACCAGCCAGCAGCAAATAGACGGGGACAAGCTCGCCG
ACTTGCCCCTAATTTCCGATGGGCCATACCCAATAGGCAGATCAATGATGGGATGGGTGG
AGATGGAGATGATATGGAAATGTTCATGGAGGAGATGAGAGAAATCAGGAGAAAACTTAG
GGAGCTGCAGTTGAGGAATTGTCTGCGTATCCTTATGGGGGAGCTCTCTAATCACCATGA
CCATCATGATGAATTTTGCCTTATGCCTTGACTCCTGCCATTTTCCATGAGGTTAATACT
GTGATCCCCACTGTTGTTCTCTTTTTCCTTACATTTTCCTGATATGCCTTTACTGATCCA
TTTGCTGTGAACCTTATGTAATTTCCATGTGTCAGGTGGGTTCTGTGTTACCAGCTTCTA
ATTGGAGATTGCCTTGGCACCCAAAGTTTCTGTCAACAGTAGAGTTTCACCCATTTGCAT
GGAAAAATGTAAAGTCAATAAAGCAATTAAAAAGCAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5JQT4_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5JQT4_HUMAN

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               101-768, gnl|bosTau2|chr11 (43016037-43015409)
               

               
               101-768, gnl|Hg17|chrX (102437670-102439132)
               

               
               101-768, gnl|Mm7|chrX (130989599-130991131)
               


               
               192-433, gnl|bosTau2|chr10 (21395845-21396084)
               

               
               192-433, gnl|Hg17|chrX (102277282-102277523)
               

               
               192-433, gnl|Mm7|chr1 (150194820-150194588)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               101-768, gnl|bosTau2|chr11 (43016037-43015409)
               

               
               101-768, gnl|Hg17|chrX (102437670-102439132)
               

               
               101-768, gnl|Mm7|chrX (130989599-130991131)
               


               
               192-433, gnl|bosTau2|chr10 (21395845-21396084)
               

               
               192-433, gnl|Hg17|chrX (102277282-102277523)
               

               
               192-433, gnl|Mm7|chr1 (150194820-150194588)

Expressed library(ies): 30 entry(ies)

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Expressed library(ies): 30 entry(ies)

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               pgl (1.18483)
               

               
               fhi (1.01747)
               

               
               fcc (0.791139)
               

               
               hyp (0.714184)
               

               
               fbs (0.701385)
               

               
               fco (0.628832)
               

               
               ebs (0.591506)
               

               
               fce (0.543183)
               

               
               fty (0.527519)
               

               
               eye (0.511509)
               

               
               spc (0.340097)
               

               
               pty (0.285429)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               ese (0.253004)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               cut (0.169924)
               

               
               ski (0.146735)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               cbr (0.127975)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (1.18483)
               

               
               fhi (1.01747)
               

               
               fcc (0.791139)
               

               
               hyp (0.714184)
               

               
               fbs (0.701385)
               

               
               fco (0.628832)
               

               
               ebs (0.591506)
               

               
               fce (0.543183)
               

               
               fty (0.527519)
               

               
               eye (0.511509)
               

               
               spc (0.340097)
               

               
               pty (0.285429)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               ese (0.253004)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               cut (0.169924)
               

               
               ski (0.146735)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               cbr (0.127975)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	101-768, gnl\|bosTau2\|chr11 (43016037-43015409)
	101-768, gnl\|Hg17\|chrX (102437670-102439132)
	101-768, gnl\|Mm7\|chrX (130989599-130991131)

	192-433, gnl\|bosTau2\|chr10 (21395845-21396084)
	192-433, gnl\|Hg17\|chrX (102277282-102277523)
	192-433, gnl\|Mm7\|chr1 (150194820-150194588)

	pgl (1.18483)
	fhi (1.01747)
	fcc (0.791139)
	hyp (0.714184)
	fbs (0.701385)
	fco (0.628832)
	ebs (0.591506)
	fce (0.543183)
	fty (0.527519)
	eye (0.511509)
	spc (0.340097)
	pty (0.285429)
	ret (0.257467)
	sug (0.254582)
	ese (0.253004)
	cbe (0.239234)
	ece (0.229305)
	nlu (0.191681)
	cmu (0.186393)
	nep (0.183925)
	cut (0.169924)
	ski (0.146735)
	ste (0.135208)
	nmm (0.132802)
	ova (0.129132)
	cbr (0.127975)
	tra (0.123092)
	eru (0.120048)
	ecc (0.115035)
	eje (0.0988338)