Non-Coding RNA Search

Ss1.1-Pig4-TMW8034A01.3

Sequence:


               
               TTTGGTGTTGTCTACATACTGCTCACAAGGCATTCGGGTTTCTTTAAAGCTTTTCCTAGG
GTGGAAATTACTTTGCCTGCCCCCTTTTATTTATGTTTAGTGATGGCCTAACTTTTATAC
AAGGCCATGATAGAGAAACAGCACTCGATCCTTAGTCCAATATACTTTTTTTTTTAAGGT
TCTTTGTATATGTCTGCGTTTTTAACATTGTTTTTGGTCCAGTTTTTGTGAAAACGTGTG
CTAGTGTGAAAGAATAGACTTTGATTTGCTCATCTTTTTGTGTGTTGAATATCAGAAATT
CAGCCTACTTGAGCAAGAAAGAAGGCACTGAACAGTTGGGTTTGAAGGAGCCTAAACATA
GTAGCTTCATTACTCAAGATATACATGTGCAAAAGCACTCATTGCCAAGTTCTTGATCCA
CTTACGTCCCAGGGGAGCTTTTTGTTTTTTTTGGAGGGGCGAAGTACTTGTTTGCATGTT
ACTGTTCTTTGTGGAAACTGTATATGCATGGTAGCATTCTTGCTTGCACTGTTTTCCTTA
CTTACGAGTTTTAATTGGCTAATAGAATATCTTTTATATAGGGCAAATTTTTTTTTCCAT
GAAGAGTATTAAAGGGGTGAGAACAGGTGAGCTAAGCACAATTTTTAATTTAGGCTCTAA
AAAGGTGTTTTATTCTAAACATGTTTGGTGTGCCTATATAGGCCTTTAAAAATGGTTTGT
ATGCTAATGACTTGTTTATCTAATGTGCACTGAACATTTTACATTAATACTGTACTGTTT
TACATTAATACTGCATGCTTTTCTATGTGAATCGAATAAAGGATGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGGTGTTGTCTACATACTGCTCACAAGGCATTCGGGTTTCTTTAAAGCTTTTCCTAGG
GTGGAAATTACTTTGCCTGCCCCCTTTTATTTATGTTTAGTGATGGCCTAACTTTTATAC
AAGGCCATGATAGAGAAACAGCACTCGATCCTTAGTCCAATATACTTTTTTTTTTAAGGT
TCTTTGTATATGTCTGCGTTTTTAACATTGTTTTTGGTCCAGTTTTTGTGAAAACGTGTG
CTAGTGTGAAAGAATAGACTTTGATTTGCTCATCTTTTTGTGTGTTGAATATCAGAAATT
CAGCCTACTTGAGCAAGAAAGAAGGCACTGAACAGTTGGGTTTGAAGGAGCCTAAACATA
GTAGCTTCATTACTCAAGATATACATGTGCAAAAGCACTCATTGCCAAGTTCTTGATCCA
CTTACGTCCCAGGGGAGCTTTTTGTTTTTTTTGGAGGGGCGAAGTACTTGTTTGCATGTT
ACTGTTCTTTGTGGAAACTGTATATGCATGGTAGCATTCTTGCTTGCACTGTTTTCCTTA
CTTACGAGTTTTAATTGGCTAATAGAATATCTTTTATATAGGGCAAATTTTTTTTTCCAT
GAAGAGTATTAAAGGGGTGAGAACAGGTGAGCTAAGCACAATTTTTAATTTAGGCTCTAA
AAAGGTGTTTTATTCTAAACATGTTTGGTGTGCCTATATAGGCCTTTAAAAATGGTTTGT
ATGCTAATGACTTGTTTATCTAATGTGCACTGAACATTTTACATTAATACTGTACTGTTT
TACATTAATACTGCATGCTTTTCTATGTGAATCGAATAAAGGATGGCA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               120-828, gnl|bosTau2|chr12 (30359481-30360223)
               

               
               120-828, gnl|Hg17|chr13 (78087177-78086436)
               

               
               120-828, gnl|Mm7|chr14 (98907973-98907206)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               120-828, gnl|bosTau2|chr12 (30359481-30360223)
               

               
               120-828, gnl|Hg17|chr13 (78087177-78086436)
               

               
               120-828, gnl|Mm7|chr14 (98907973-98907206)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               vin (0.332557)
               

               
               pan (0.23596)
               

               
               mgp (0.230681)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               med (0.116252)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               pan (0.23596)
               

               
               mgp (0.230681)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               med (0.116252)

	120-828, gnl\|bosTau2\|chr12 (30359481-30360223)
	120-828, gnl\|Hg17\|chr13 (78087177-78086436)
	120-828, gnl\|Mm7\|chr14 (98907973-98907206)

	vin (0.332557)
	pan (0.23596)
	mgp (0.230681)
	lun (0.150489)
	bfe (0.149858)
	liv (0.146284)
	sug (0.127291)
	ese (0.126502)
	med (0.116252)