Ss1.1-Pig4-TMW8034A04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTGGAGGCCGGAGCCTGGGACACCGCCGGGGGGAGAGGAGCGGAGCCTGTCCGAGCCCC GGCCTCAAGTAACGCCACCGCCCCGGAGCCACCTGGGAGGCCCCCCTCCCCACGAAGTGC CTCTTTGCGTAGCGCCGACCCCACCCCCACTCTCACTGGTACCATTACGGCGGGACGGGC CATGGCGGGTCGGGGAGGTGCAGCGCGACCCAACGGACCAGCTGCTGGGAACAAGATCTG TCAGTTTAAGTTGGTCCTGCTGGGGGAGTCTGCGGTGGGCAAATCCAGCCTCGTCCTCCG CTTCGTCAAGGGACAATTCCACGAGTACCAGGAGAGCACAATTGGAGCGGCCTTCCTCAC ACAGACCGTCTGCTTGGACGACACAACAGTCAAGTTTGAGATCTGGGACACAGCTGGACA GGAGCGGTATCACAGCCTGGCCCCCATGTACTACCGGGGCGCCCAGGCTGCCATCGTGGT CTATGACATCACCAACACAGACACGTTTGCACGGGCCAAGAACTGGGTGAAGGAGTTACA GAGACAGGCCAGCCCCAACATCGTCATCGCCCTCGCGGGCAACAAGGCGGACCTGGCCAG CAAGAGAGCCGTGGAGTTCCAGGAAGCACAAGCCTATGCAGAGGACAACAGTTTGCTGTT CATGGAGACATCGGCAAAGACTGCAATGAATGTGAATGAAATTTTCATGGCCATAGCCAA GAAGCTTCCCAAGAACGAGCCCCAGAATGCAGCTGGTGCTCCGGGCCGGAACCGAGGTGT GGACCTCCAGGAGAACAACCCCGCCAGCCGGAGCCAGTGCTGCAGCAACTGAGCCCCCCT TGCCTGCCCATTGCCCCCACCTCCTCCGCCTCAACGACCCGACTGGAATCCACTCTAACC AATCGCACTTAACGACTCGGGCCACCACTAGGGGGGGCAGAGGGAGGGGTCCACCGTAAT TTCTCCATATCATTTTGATCATAGGCCGGAGTGAGTTATTCCACCTGCACCTTTCTGTAC AAATACTAATTCAATTTTAAGTCTTAAGTCACTTTTTTAATATATATGATCTGCTCTTCC CACTTCCTGCCCTTTCTACTGCTCTCCCACTCTTCCTCTGCCGGTAGTAGCCACGTGCCC CCGTTGCCCCAACCCTAGTGTATGGGGAGGTGGGGGTTGGAGCAGTTCCCCTTCTTTCCC TCTTGCTGATTAGCGGGCTCAGCAGGAGCATCCATATCCTTACTGTGTTTGGAGTGCGCT TGGTTCCGGGTGGCGGGGCAGGCCCTGGGGTTAGGGAAGGGAGGGGCCGCTCTCCCCTCA GCTGGCTGTCATCAGGCTGCGGCGCCCCCTCACCCCCTGACTCACAGCTGGGAGAGAACC CACAGCATTACCACAGCATTATTGTGACAGCCACGAACCCATTGCCCACAGCCCCCTTCC CCCTCGTCCTTGGTCACCCTGACCTCTGGCTCTGAGCCCTGTTCTGACCAAATCACGATG ATGAGTATTGGGGGGGGGCGGGTAAGGGGGGGAGTGGGAGGGGATGGAACCAACTTTTTC TGTATTTTGTATTGTATGTTTTCTTCAACATGTAACCAATCAGTATCTTGTCAATATAGT CAGCCGATCGAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTGGAGGCCGGAGCCTGGGACACCGCCGGGGGGAGAGGAGCGGAGCCTGTCCGAGCCCC GGCCTCAAGTAACGCCACCGCCCCGGAGCCACCTGGGAGGCCCCCCTCCCCACGAAGTGC CTCTTTGCGTAGCGCCGACCCCACCCCCACTCTCACTGGTACCATTACGGCGGGACGGGC CATGGCGGGTCGGGGAGGTGCAGCGCGACCCAACGGACCAGCTGCTGGGAACAAGATCTG TCAGTTTAAGTTGGTCCTGCTGGGGGAGTCTGCGGTGGGCAAATCCAGCCTCGTCCTCCG CTTCGTCAAGGGACAATTCCACGAGTACCAGGAGAGCACAATTGGAGCGGCCTTCCTCAC ACAGACCGTCTGCTTGGACGACACAACAGTCAAGTTTGAGATCTGGGACACAGCTGGACA GGAGCGGTATCACAGCCTGGCCCCCATGTACTACCGGGGCGCCCAGGCTGCCATCGTGGT CTATGACATCACCAACACAGACACGTTTGCACGGGCCAAGAACTGGGTGAAGGAGTTACA GAGACAGGCCAGCCCCAACATCGTCATCGCCCTCGCGGGCAACAAGGCGGACCTGGCCAG CAAGAGAGCCGTGGAGTTCCAGGAAGCACAAGCCTATGCAGAGGACAACAGTTTGCTGTT CATGGAGACATCGGCAAAGACTGCAATGAATGTGAATGAAATTTTCATGGCCATAGCCAA GAAGCTTCCCAAGAACGAGCCCCAGAATGCAGCTGGTGCTCCGGGCCGGAACCGAGGTGT GGACCTCCAGGAGAACAACCCCGCCAGCCGGAGCCAGTGCTGCAGCAACTGAGCCCCCCT TGCCTGCCCATTGCCCCCACCTCCTCCGCCTCAACGACCCGACTGGAATCCACTCTAACC AATCGCACTTAACGACTCGGGCCACCACTAGGGGGGGCAGAGGGAGGGGTCCACCGTAAT TTCTCCATATCATTTTGATCATAGGCCGGAGTGAGTTATTCCACCTGCACCTTTCTGTAC AAATACTAATTCAATTTTAAGTCTTAAGTCACTTTTTTAATATATATGATCTGCTCTTCC CACTTCCTGCCCTTTCTACTGCTCTCCCACTCTTCCTCTGCCGGTAGTAGCCACGTGCCC CCGTTGCCCCAACCCTAGTGTATGGGGAGGTGGGGGTTGGAGCAGTTCCCCTTCTTTCCC TCTTGCTGATTAGCGGGCTCAGCAGGAGCATCCATATCCTTACTGTGTTTGGAGTGCGCT TGGTTCCGGGTGGCGGGGCAGGCCCTGGGGTTAGGGAAGGGAGGGGCCGCTCTCCCCTCA GCTGGCTGTCATCAGGCTGCGGCGCCCCCTCACCCCCTGACTCACAGCTGGGAGAGAACC CACAGCATTACCACAGCATTATTGTGACAGCCACGAACCCATTGCCCACAGCCCCCTTCC CCCTCGTCCTTGGTCACCCTGACCTCTGGCTCTGAGCCCTGTTCTGACCAAATCACGATG ATGAGTATTGGGGGGGGGCGGGTAAGGGGGGGAGTGGGAGGGGATGGAACCAACTTTTTC TGTATTTTGTATTGTATGTTTTCTTCAACATGTAACCAATCAGTATCTTGTCAATATAGT CAGCCGATCGAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 715-954, - strand, RNAz p=0.959724 | |
| 1072-1228, - strand, RNAz p=0.989766 | |
| 1269-1538, - strand, RNAz p=0.93315 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 715-954, - strand, RNAz p=0.959724 | |
| 1072-1228, - strand, RNAz p=0.989766 | |
| 1269-1538, - strand, RNAz p=0.93315 |
| Aligned organism(s): 71 entry(ies) | More info |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
| 102-347, gnl|bosTau2|chr19 (36656330-36656084) | |
| 102-347, gnl|canFam2|chr9 (24089407-24089251) | |
| 102-347, gnl|danRer3|chr19 (23725152-23725023) | |
| 102-347, gnl|dasNov1|scaffold_9796 (58053-58207) | |
| 102-347, gnl|echTel1|scaffold_103058 (4348-4204) | |
| 102-347, gnl|fr1|chrUn (233254950-233255079) | |
| 102-347, gnl|galGal2|chr27_random (328266-328175) | |
| 102-347, gnl|hg17|chr10 (75853643-75853771) | |
| 102-347, gnl|Hg17|chr17 (37536126-37535881) | |
| 102-347, gnl|loxAfr1|scaffold_20244 (19220-19064) | |
| 102-347, gnl|mm7|chr11 (100828955-100829111) | |
| 102-347, gnl|Mm7|chr11 (100829200-100828954) | |
| 102-347, gnl|monDom2|scaffold_18 (52474135-52474291) | |
| 102-347, gnl|oryCun1|scaffold_149017 (431-287) | |
| 102-347, gnl|panTro1|chr8 (77110970-77111098) | |
| 102-347, gnl|rheMac2|chr9 (62587969-62587844) | |
| 102-347, gnl|rn3|chr2 (104411297-104411140) | |
| 102-347, gnl|tetNig1|chr3 (12707562-12707433) | |
| 500-623, gnl|bosTau2|chr19 (36654266-36654143) | |
| 500-623, gnl|canFam2|chr9 (24091477-24091291) | |
| 500-623, gnl|canFam2|chr9 (24091434-24091311) | |
| 500-623, gnl|canFam2|chr9 (24091317-24091432) | |
| 500-623, gnl|danRer3|chr19 (23728956-23728755) | |
| 500-623, gnl|danRer3|chr19 (23666691-23666810) | |
| 500-623, gnl|danRer3|chr3 (7668609-7668463) | |
| 500-623, gnl|dasNov1|scaffold_148179 (4356-4208) | |
| 500-623, gnl|dasNov1|scaffold_9796 (57785-57921) | |
| 500-623, gnl|dasNov1|scaffold_9796 (57902-57783) | |
| 500-623, gnl|echTel1|scaffold_103058 (4619-4486) | |
| 500-623, gnl|echTel1|scaffold_103058 (4505-4619) | |
| 500-623, gnl|echTel1|scaffold_182901 (11327-11477) | |
| 500-623, gnl|fr1|chrUn (96772328-96772476) | |
| 500-623, gnl|fr1|chrUn (233254114-233254297) | |
| 500-623, gnl|fr1|chrUn (96772453-96772334) | |
| 500-623, gnl|galGal2|chr27_random (329908-329750) | |
| 500-623, gnl|galGal2|chr27_random (329902-329779) | |
| 500-623, gnl|galGal2|chr27_random (329785-329901) | |
| 500-623, gnl|hg17|chr10 (75853399-75853535) | |
| 500-623, gnl|hg17|chr17 (37533801-37533950) | |
| 500-623, gnl|Hg17|chr17 (37533927-37533804) | |
| 500-623, gnl|hg17|chr5 (90808270-90808388) | |
| 500-623, gnl|loxAfr1|scaffold_20244 (21378-21229) | |
| 500-623, gnl|loxAfr1|scaffold_20244 (21369-21249) | |
| 500-623, gnl|loxAfr1|scaffold_20244 (21255-21370) | |
| 500-623, gnl|mm7|chr11 (100826879-100827026) | |
| 500-623, gnl|mm7|chr11 (100826885-100827006) | |
| 500-623, gnl|mm7|chr11 (100827000-100826881) | |
| 500-623, gnl|Mm7|chr11 (100827003-100826880) | |
| 500-623, gnl|monDom2|scaffold_18 (52467386-52467532) | |
| 500-623, gnl|monDom2|scaffold_18 (52467392-52467515) | |
| 500-623, gnl|monDom2|scaffold_18 (52467509-52467398) | |
| 500-623, gnl|oryCun1|scaffold_149017 (703-569) | |
| 500-623, gnl|oryCun1|scaffold_149017 (588-703) | |
| 500-623, gnl|oryCun1|scaffold_99113 (9640-9789) | |
| 500-623, gnl|panTro1|chr19 (40736121-40736270) | |
| 500-623, gnl|panTro1|chr4 (24418410-24418292) | |
| 500-623, gnl|panTro1|chr8 (77110726-77110862) | |
| 500-623, gnl|rheMac2|chr16 (52235420-52235569) | |
| 500-623, gnl|rheMac2|chr6 (87714321-87714440) | |
| 500-623, gnl|rheMac2|chr9 (62588213-62588077) | |
| 500-623, gnl|rn3|chr10 (89669320-89669467) | |
| 500-623, gnl|rn3|chr10 (89669441-89669325) | |
| 500-623, gnl|rn3|chr2 (104411580-104411444) | |
| 500-623, gnl|tetNig1|chr3 (12708764-12708613) | |
| 500-623, gnl|tetNig1|chr3 (12708840-12708631) | |
| 500-623, gnl|tetNig1|chrUn_random (31865651-31865532) | |
| 500-623, gnl|xenTro1|scaffold_394 (1142054-1142203) | |
| 500-623, gnl|xenTro1|scaffold_394 (1142177-1142062) | |
| 715-1632, gnl|bosTau2|chr19 (36652181-36651260) | |
| 715-1632, gnl|Hg17|chr17 (37531444-37530531) | |
| 715-1632, gnl|Mm7|chr11 (100825203-100824313) |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 102-347, gnl|bosTau2|chr19 (36656330-36656084) | |
| 102-347, gnl|canFam2|chr9 (24089407-24089251) | |
| 102-347, gnl|danRer3|chr19 (23725152-23725023) | |
| 102-347, gnl|dasNov1|scaffold_9796 (58053-58207) | |
| 102-347, gnl|echTel1|scaffold_103058 (4348-4204) | |
| 102-347, gnl|fr1|chrUn (233254950-233255079) | |
| 102-347, gnl|galGal2|chr27_random (328266-328175) | |
| 102-347, gnl|hg17|chr10 (75853643-75853771) | |
| 102-347, gnl|Hg17|chr17 (37536126-37535881) | |
| 102-347, gnl|loxAfr1|scaffold_20244 (19220-19064) | |
| 102-347, gnl|mm7|chr11 (100828955-100829111) | |
| 102-347, gnl|Mm7|chr11 (100829200-100828954) | |
| 102-347, gnl|monDom2|scaffold_18 (52474135-52474291) | |
| 102-347, gnl|oryCun1|scaffold_149017 (431-287) | |
| 102-347, gnl|panTro1|chr8 (77110970-77111098) | |
| 102-347, gnl|rheMac2|chr9 (62587969-62587844) | |
| 102-347, gnl|rn3|chr2 (104411297-104411140) | |
| 102-347, gnl|tetNig1|chr3 (12707562-12707433) | |
| 500-623, gnl|bosTau2|chr19 (36654266-36654143) | |
| 500-623, gnl|canFam2|chr9 (24091477-24091291) | |
| 500-623, gnl|canFam2|chr9 (24091434-24091311) | |
| 500-623, gnl|canFam2|chr9 (24091317-24091432) | |
| 500-623, gnl|danRer3|chr19 (23728956-23728755) | |
| 500-623, gnl|danRer3|chr19 (23666691-23666810) | |
| 500-623, gnl|danRer3|chr3 (7668609-7668463) | |
| 500-623, gnl|dasNov1|scaffold_148179 (4356-4208) | |
| 500-623, gnl|dasNov1|scaffold_9796 (57785-57921) | |
| 500-623, gnl|dasNov1|scaffold_9796 (57902-57783) | |
| 500-623, gnl|echTel1|scaffold_103058 (4619-4486) | |
| 500-623, gnl|echTel1|scaffold_103058 (4505-4619) | |
| 500-623, gnl|echTel1|scaffold_182901 (11327-11477) | |
| 500-623, gnl|fr1|chrUn (96772328-96772476) | |
| 500-623, gnl|fr1|chrUn (233254114-233254297) | |
| 500-623, gnl|fr1|chrUn (96772453-96772334) | |
| 500-623, gnl|galGal2|chr27_random (329908-329750) | |
| 500-623, gnl|galGal2|chr27_random (329902-329779) | |
| 500-623, gnl|galGal2|chr27_random (329785-329901) | |
| 500-623, gnl|hg17|chr10 (75853399-75853535) | |
| 500-623, gnl|hg17|chr17 (37533801-37533950) | |
| 500-623, gnl|Hg17|chr17 (37533927-37533804) | |
| 500-623, gnl|hg17|chr5 (90808270-90808388) | |
| 500-623, gnl|loxAfr1|scaffold_20244 (21378-21229) | |
| 500-623, gnl|loxAfr1|scaffold_20244 (21369-21249) | |
| 500-623, gnl|loxAfr1|scaffold_20244 (21255-21370) | |
| 500-623, gnl|mm7|chr11 (100826879-100827026) | |
| 500-623, gnl|mm7|chr11 (100826885-100827006) | |
| 500-623, gnl|mm7|chr11 (100827000-100826881) | |
| 500-623, gnl|Mm7|chr11 (100827003-100826880) | |
| 500-623, gnl|monDom2|scaffold_18 (52467386-52467532) | |
| 500-623, gnl|monDom2|scaffold_18 (52467392-52467515) | |
| 500-623, gnl|monDom2|scaffold_18 (52467509-52467398) | |
| 500-623, gnl|oryCun1|scaffold_149017 (703-569) | |
| 500-623, gnl|oryCun1|scaffold_149017 (588-703) | |
| 500-623, gnl|oryCun1|scaffold_99113 (9640-9789) | |
| 500-623, gnl|panTro1|chr19 (40736121-40736270) | |
| 500-623, gnl|panTro1|chr4 (24418410-24418292) | |
| 500-623, gnl|panTro1|chr8 (77110726-77110862) | |
| 500-623, gnl|rheMac2|chr16 (52235420-52235569) | |
| 500-623, gnl|rheMac2|chr6 (87714321-87714440) | |
| 500-623, gnl|rheMac2|chr9 (62588213-62588077) | |
| 500-623, gnl|rn3|chr10 (89669320-89669467) | |
| 500-623, gnl|rn3|chr10 (89669441-89669325) | |
| 500-623, gnl|rn3|chr2 (104411580-104411444) | |
| 500-623, gnl|tetNig1|chr3 (12708764-12708613) | |
| 500-623, gnl|tetNig1|chr3 (12708840-12708631) | |
| 500-623, gnl|tetNig1|chrUn_random (31865651-31865532) | |
| 500-623, gnl|xenTro1|scaffold_394 (1142054-1142203) | |
| 500-623, gnl|xenTro1|scaffold_394 (1142177-1142062) | |
| 715-1632, gnl|bosTau2|chr19 (36652181-36651260) | |
| 715-1632, gnl|Hg17|chr17 (37531444-37530531) | |
| 715-1632, gnl|Mm7|chr11 (100825203-100824313) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| ill (0.526778) | |
| nje (0.49776) | |
| nmm (0.398406) | |
| nlu (0.383362) | |
| cly (0.361925) | |
| nco (0.323468) | |
| ute (0.265569) | |
| clu (0.239292) | |
| ebs (0.236602) | |
| med (0.232504) | |
| mas (0.210305) | |
| cty (0.20816) | |
| sto (0.179824) | |
| fty (0.17584) | |
| ton (0.1755) | |
| cje (0.165235) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| pla (0.133672) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| jej (0.0989218) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.526778) | |
| nje (0.49776) | |
| nmm (0.398406) | |
| nlu (0.383362) | |
| cly (0.361925) | |
| nco (0.323468) | |
| ute (0.265569) | |
| clu (0.239292) | |
| ebs (0.236602) | |
| med (0.232504) | |
| mas (0.210305) | |
| cty (0.20816) | |
| sto (0.179824) | |
| fty (0.17584) | |
| ton (0.1755) | |
| cje (0.165235) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| pla (0.133672) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| jej (0.0989218) |