Non-Coding RNA Search

Ss1.1-Pig4-TMW8034A06.5

Sequence:


               
               ATAAATAGTGTTGGAAAACAGACAGGGATGACTTTGAATGAACGATTTGGGATCCTGAAG
GAACAAAGAGCCACTCTCACTTTCAACAAAGGAGGAAGCCGCTTTGTAACTGTGGGATAG
ATCCCATGTCAAAGGGACCTTTGAGTGATGACTCTTTTAAAAGTCGAATTTCTCAGAGTT
CATCACAGAAATTCAAGAAACTTTATTTCAAAATATTCACAAGGCTAAAATAACTCTTAT
TTTTATTTTTGAAGTTGTTTTTTTTAAAATATGTATAAATAATGCCCTGGAAGAATAACA
GGGAATATACCTATATGTTCTTAAAGACTTCATGGTTGACCCAGACAGAACAATTCTCTG
TTTGACTTCTTCGGTTCCTTATGCAGCAGAAAGAAGGCAGAAAGACAGAAATTAATTATT
TTTATGATAGTGGTATTTAGGATCTCATCACCTTTGCCCATTTTTTACACTTTGCCATGG
TAAATTTTGGTCTTGAGAAGTATGAGTAGGTCCTTTTGTTGCTCTCACTTACCCTTTAAT
AGCATTAATGTAATTAATAAGTGCAGTTAACTTTTCTTCATTAAGGATATTTTAAAAATT
ACCAGAGTTCAGTTTGGGGGTTTGAGATTTATGGGAATATTTGGAACTTGGCTCATTTCA
CGCATAATGTTAGGTTATTCCTCCAGAGTTTTAAATCTTTAATGCTGAACTTTTAACAGG
AAATGTGACTCTAGGCATTAGTCTCAGTTAAAATGTTAAAGGCTATGAATGGGTGTTTAC
AAAGTTATCTGATAGAGCCTTGGAGGAGGAAGGTCTAGTGTAAAAATCTGATATTTTGTT
TAATACATGGACAACGCATGAGAGGAAGTAGCAGGTGGAAGACAACTGAGATGAAAAACT
TTAAAACCTAGGCCATAGGCCTACTGTTTGAATTTAGTATAGGTTCCCCCACCCTCTGCT
CCCATGGCATATGGAAGTTCCCAAGCCAGTGATTGAACCGGCACCACAGTGACCTGAGCT
GCTGCAGTGGCAATGCCTGATACTTAACCTGTGGCACTGCAAGAGAACTCCAAGATTTAG
CGTAGTCTTGAGTCTAGTGTCACAAAGAATTCTTCAAATGATTTTTAGAATAATTATTAA
AGTGGATTGAGTCCCTTAGATATTTTGATAGTAAAATTAGTCATAAAGCCCTAGATTTCT
TGTTCAAAAAGTTACATTTTAAAAGCTTTTAAGTTTGCAAACTTAAACAGTATACAGCAC
TAAAAATAAAAAAAATATATATATTCATATATGTCACAAGGTAAATGTAAAATCATTATA
GTAATGTTTAACCTTGTTTTGTACCTTTGCTTCTGATTTCTTGTATAAAGTTCAGGCATG
GTAAGAAAAGAGCTTTTCACTGTACACTCTGGAGGGATAGGAGGAGTTTGTTGTGCCAAG
CTAGTGCTAAAAATCCTCAGATGGTTGTAAACTATTAAGTTATGGTATAATGCCAAAATG
CAGCAAAATATTCAAACTAAAGTTTACAATTTTCGTCATTTTGAAGCTTAATTTTTTGGT
TTTCTATAATGTTAAAACCTCTAAGTGGGTATTAGTTTCCCTACAGTGTATTATTAGTGT
TGATTTTCTCTGTTAAAACACACACACACACACAAAATATTAAGTTATGGCTTCTGTCTG
CCTTGCAGTGTATACTAGGCTTTCATTATTGTCTCTCATGCTTCTTGAATTACTTGGTTT
ATGCTAGCCACGGAAAGCTATCAATAACAGTTTCATGCTTATACCAAAGAACCAAATCTG
ATCCTTAATATCTGGTATTTTGCTTGTAAGTCTACTGATAAGGGATTATTGAAAGCCAGT
CATACAATTTGAAAATAAACTCTGGTCTCTCCGTAGGCCAAGGACTCATTGCAAAACAGT
TTTGCAAGTGTGAATACTTAGATTCGATCCATGAACAATACATTTTAGACTGGTTTAGAA
TTTACTGATAAAAAAACAACTGAGCGTGAGTTTGCTGCCTTTAGAACAGATTGTAAAAAA
ATGGTATAAAGGTGTTTTCATTTTCTTATTATTTTAAATATTATATAGAGCTATTAATAA
TGCCTTTTTCTGGGAAAAATCTTAAAAATTGCCCCAAATATTGATATTAAATGCATCAAA
CGAAGTGTCTTTGGTATATTAAAATTTTGCTCTTCATGCATCTGTAATTTCATTTTCTTT
TTAACTATAAAAATCTTGCTTTTGTTACAACCAAATTAAAATTCTTGAGTGCTAAAATGT
TGTATATAAACAAAAGAATATGCTTTTTTTGCAGGAAAATTTTCCTTTCTTGGAATGTGG
TTGGTTGTAGTCATCCTTTTTTAGTTCTTAAACTTTTTTTTTTTTAAATAGGATGCAACT
TAAATTTCCCTTTGCATCAAGGTGTATACAAAACATTGATGCAGTGCATCACAAAATGAA
AGTTTGTATTTAATGAGGAGATGCTTTACACTGTACTTTTTTGGTGTTTTTTGGAAAAGT
TACATTTAGATCTATTCTGAAGCTGTTCATTTTTAACAAATAAAATATTACAGGTCAAAA
GTGGTTTATTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAAATAGTGTTGGAAAACAGACAGGGATGACTTTGAATGAACGATTTGGGATCCTGAAG
GAACAAAGAGCCACTCTCACTTTCAACAAAGGAGGAAGCCGCTTTGTAACTGTGGGATAG
ATCCCATGTCAAAGGGACCTTTGAGTGATGACTCTTTTAAAAGTCGAATTTCTCAGAGTT
CATCACAGAAATTCAAGAAACTTTATTTCAAAATATTCACAAGGCTAAAATAACTCTTAT
TTTTATTTTTGAAGTTGTTTTTTTTAAAATATGTATAAATAATGCCCTGGAAGAATAACA
GGGAATATACCTATATGTTCTTAAAGACTTCATGGTTGACCCAGACAGAACAATTCTCTG
TTTGACTTCTTCGGTTCCTTATGCAGCAGAAAGAAGGCAGAAAGACAGAAATTAATTATT
TTTATGATAGTGGTATTTAGGATCTCATCACCTTTGCCCATTTTTTACACTTTGCCATGG
TAAATTTTGGTCTTGAGAAGTATGAGTAGGTCCTTTTGTTGCTCTCACTTACCCTTTAAT
AGCATTAATGTAATTAATAAGTGCAGTTAACTTTTCTTCATTAAGGATATTTTAAAAATT
ACCAGAGTTCAGTTTGGGGGTTTGAGATTTATGGGAATATTTGGAACTTGGCTCATTTCA
CGCATAATGTTAGGTTATTCCTCCAGAGTTTTAAATCTTTAATGCTGAACTTTTAACAGG
AAATGTGACTCTAGGCATTAGTCTCAGTTAAAATGTTAAAGGCTATGAATGGGTGTTTAC
AAAGTTATCTGATAGAGCCTTGGAGGAGGAAGGTCTAGTGTAAAAATCTGATATTTTGTT
TAATACATGGACAACGCATGAGAGGAAGTAGCAGGTGGAAGACAACTGAGATGAAAAACT
TTAAAACCTAGGCCATAGGCCTACTGTTTGAATTTAGTATAGGTTCCCCCACCCTCTGCT
CCCATGGCATATGGAAGTTCCCAAGCCAGTGATTGAACCGGCACCACAGTGACCTGAGCT
GCTGCAGTGGCAATGCCTGATACTTAACCTGTGGCACTGCAAGAGAACTCCAAGATTTAG
CGTAGTCTTGAGTCTAGTGTCACAAAGAATTCTTCAAATGATTTTTAGAATAATTATTAA
AGTGGATTGAGTCCCTTAGATATTTTGATAGTAAAATTAGTCATAAAGCCCTAGATTTCT
TGTTCAAAAAGTTACATTTTAAAAGCTTTTAAGTTTGCAAACTTAAACAGTATACAGCAC
TAAAAATAAAAAAAATATATATATTCATATATGTCACAAGGTAAATGTAAAATCATTATA
GTAATGTTTAACCTTGTTTTGTACCTTTGCTTCTGATTTCTTGTATAAAGTTCAGGCATG
GTAAGAAAAGAGCTTTTCACTGTACACTCTGGAGGGATAGGAGGAGTTTGTTGTGCCAAG
CTAGTGCTAAAAATCCTCAGATGGTTGTAAACTATTAAGTTATGGTATAATGCCAAAATG
CAGCAAAATATTCAAACTAAAGTTTACAATTTTCGTCATTTTGAAGCTTAATTTTTTGGT
TTTCTATAATGTTAAAACCTCTAAGTGGGTATTAGTTTCCCTACAGTGTATTATTAGTGT
TGATTTTCTCTGTTAAAACACACACACACACACAAAATATTAAGTTATGGCTTCTGTCTG
CCTTGCAGTGTATACTAGGCTTTCATTATTGTCTCTCATGCTTCTTGAATTACTTGGTTT
ATGCTAGCCACGGAAAGCTATCAATAACAGTTTCATGCTTATACCAAAGAACCAAATCTG
ATCCTTAATATCTGGTATTTTGCTTGTAAGTCTACTGATAAGGGATTATTGAAAGCCAGT
CATACAATTTGAAAATAAACTCTGGTCTCTCCGTAGGCCAAGGACTCATTGCAAAACAGT
TTTGCAAGTGTGAATACTTAGATTCGATCCATGAACAATACATTTTAGACTGGTTTAGAA
TTTACTGATAAAAAAACAACTGAGCGTGAGTTTGCTGCCTTTAGAACAGATTGTAAAAAA
ATGGTATAAAGGTGTTTTCATTTTCTTATTATTTTAAATATTATATAGAGCTATTAATAA
TGCCTTTTTCTGGGAAAAATCTTAAAAATTGCCCCAAATATTGATATTAAATGCATCAAA
CGAAGTGTCTTTGGTATATTAAAATTTTGCTCTTCATGCATCTGTAATTTCATTTTCTTT
TTAACTATAAAAATCTTGCTTTTGTTACAACCAAATTAAAATTCTTGAGTGCTAAAATGT
TGTATATAAACAAAAGAATATGCTTTTTTTGCAGGAAAATTTTCCTTTCTTGGAATGTGG
TTGGTTGTAGTCATCCTTTTTTAGTTCTTAAACTTTTTTTTTTTTAAATAGGATGCAACT
TAAATTTCCCTTTGCATCAAGGTGTATACAAAACATTGATGCAGTGCATCACAAAATGAA
AGTTTGTATTTAATGAGGAGATGCTTTACACTGTACTTTTTTGGTGTTTTTTGGAAAAGT
TACATTTAGATCTATTCTGAAGCTGTTCATTTTTAACAAATAAAATATTACAGGTCAAAA
GTGGTTTATTCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               19-175, + strand, RNAz p=0.681348

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               19-175, + strand, RNAz p=0.681348

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_032288, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_032288, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               19-945, gnl|bosTau2|chr1 (42558404-42559316)
               

               
               19-945, gnl|Hg17|chr3 (198996989-198997930)
               

               
               19-945, gnl|Mm7|chr16 (32580053-32580987)
               


               
               1075-2592, gnl|bosTau2|chr1 (42559303-42560815)
               

               
               1075-2592, gnl|Hg17|chr3 (198997917-198999487)
               

               
               1075-2592, gnl|Mm7|chr16 (32580974-32582567)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-945, gnl|bosTau2|chr1 (42558404-42559316)
               

               
               19-945, gnl|Hg17|chr3 (198996989-198997930)
               

               
               19-945, gnl|Mm7|chr16 (32580053-32580987)
               


               
               1075-2592, gnl|bosTau2|chr1 (42559303-42560815)
               

               
               1075-2592, gnl|Hg17|chr3 (198997917-198999487)
               

               
               1075-2592, gnl|Mm7|chr16 (32580974-32582567)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

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               bfe (0.899146)
               

               
               fty (0.527519)
               

               
               vin (0.332557)
               

               
               liv (0.292569)
               

               
               pty (0.285429)
               

               
               ste (0.270416)
               

               
               kid (0.259471)
               

               
               tra (0.246184)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.899146)
               

               
               fty (0.527519)
               

               
               vin (0.332557)
               

               
               liv (0.292569)
               

               
               pty (0.285429)
               

               
               ste (0.270416)
               

               
               kid (0.259471)
               

               
               tra (0.246184)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	19-945, gnl\|bosTau2\|chr1 (42558404-42559316)
	19-945, gnl\|Hg17\|chr3 (198996989-198997930)
	19-945, gnl\|Mm7\|chr16 (32580053-32580987)

	1075-2592, gnl\|bosTau2\|chr1 (42559303-42560815)
	1075-2592, gnl\|Hg17\|chr3 (198997917-198999487)
	1075-2592, gnl\|Mm7\|chr16 (32580974-32582567)

	bfe (0.899146)
	fty (0.527519)
	vin (0.332557)
	liv (0.292569)
	pty (0.285429)
	ste (0.270416)
	kid (0.259471)
	tra (0.246184)
	cty (0.20816)
	tes (0.207814)
	aor (0.195274)
	nlu (0.191681)
	sag (0.182715)
	rec (0.17307)
	mga (0.160205)
	tbr (0.154178)
	ret (0.128733)
	ese (0.126502)
	bla (0.124347)
	eru (0.120048)
	clu (0.119646)
	ecc (0.115035)
	eje (0.0988338)
	ldo (0.0970026)