Non-Coding RNA Search

Ss1.1-Pig4-TMW8034A11.3

Sequence:


               
               TTTTTTGTTTGTTTTCTTGGTTTTTTTTTTTTTTTGCCTTATGTCAGAATCAATGTATCT
TTTGGGATTACCTCTCTGAATTACAAGATAAATGATTGGATTATGATTTGTGAATACATT
TTTAGGAATCCAGCTCTGGTATACTAAGACGTAAGGTTGGAATTTGTGACTTTTAAGGTT
TACGTATATACCAGACCACAGAGAACATTGTGTCTCATTAGGCCCGGATGGATGTTATGA
GACTGACATTTTATACATCTTCAAAGGACCTGTGGATGTTTTGTTAATTCATTCAGCCAT
AATGAATTGAGAATGGAGAGACATTCTGGGCAAAGCACTGGGTTTTGATATTTTTAAATC
AAGCACTGATTACAGATAACATCAGTATTTATGTAAATAATTGAAAAAGCATGCCTCGGG
CAGAGGCAGAAAGGGAAATTTCATTAGAGAAATAACTCAGGGGAACTTTTCATTAAGAAT
TTATGTTTAAAGGGTTTTGGTTGAGAGTCAGTAATAGAAGGGCGTGTATAAAAAACTGTT
AACTTCACTGATTTTTTTTTTTTAAAGCTGATTTGTTAATATCTGAATGCCTGAATCTGG
GAATTTGGAATATGTATTGAATGTTTTGGTGCCTTAGACAGATGTATGATTAAATTAACT
TATGTAAAATTAAGTGTTGAAACAAATGGCTGTTTGTATTATTTTTGTATTATTTAAAAA
TTGAAAAATCTCTTCTGAAATAAATTTTGACCATTTTCTGTAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTGTTTGTTTTCTTGGTTTTTTTTTTTTTTTGCCTTATGTCAGAATCAATGTATCT
TTTGGGATTACCTCTCTGAATTACAAGATAAATGATTGGATTATGATTTGTGAATACATT
TTTAGGAATCCAGCTCTGGTATACTAAGACGTAAGGTTGGAATTTGTGACTTTTAAGGTT
TACGTATATACCAGACCACAGAGAACATTGTGTCTCATTAGGCCCGGATGGATGTTATGA
GACTGACATTTTATACATCTTCAAAGGACCTGTGGATGTTTTGTTAATTCATTCAGCCAT
AATGAATTGAGAATGGAGAGACATTCTGGGCAAAGCACTGGGTTTTGATATTTTTAAATC
AAGCACTGATTACAGATAACATCAGTATTTATGTAAATAATTGAAAAAGCATGCCTCGGG
CAGAGGCAGAAAGGGAAATTTCATTAGAGAAATAACTCAGGGGAACTTTTCATTAAGAAT
TTATGTTTAAAGGGTTTTGGTTGAGAGTCAGTAATAGAAGGGCGTGTATAAAAAACTGTT
AACTTCACTGATTTTTTTTTTTTAAAGCTGATTTGTTAATATCTGAATGCCTGAATCTGG
GAATTTGGAATATGTATTGAATGTTTTGGTGCCTTAGACAGATGTATGATTAAATTAACT
TATGTAAAATTAAGTGTTGAAACAAATGGCTGTTTGTATTATTTTTGTATTATTTAAAAA
TTGAAAAATCTCTTCTGAAATAAATTTTGACCATTTTCTGTAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               362-476, + strand, RNAz p=0.941157

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               362-476, + strand, RNAz p=0.941157

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               26-762, gnl|bosTau2|chr16 (49749067-49748358)
               

               
               26-762, gnl|Hg17|chr1 (183373311-183372580)
               

               
               26-762, gnl|Mm7|chr1 (150033098-150033841)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-762, gnl|bosTau2|chr16 (49749067-49748358)
               

               
               26-762, gnl|Hg17|chr1 (183373311-183372580)
               

               
               26-762, gnl|Mm7|chr1 (150033098-150033841)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               gul (0.177588)
               

               
               lin (0.145603)
               

               
               pla (0.133672)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               lin (0.145603)
               

               
               pla (0.133672)

	26-762, gnl\|bosTau2\|chr16 (49749067-49748358)
	26-762, gnl\|Hg17\|chr1 (183373311-183372580)
	26-762, gnl\|Mm7\|chr1 (150033098-150033841)