Ss1.1-Pig4-TMW8034A20.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAGAAGAAGTTTGGTGACAGGCGGGGCATTGAAGACATCATCGTGAGCAAACGGAGATT CCAGTATGAGGAGGAAGTGAAGGCTAACCCGCACAACTACGACGCTTGGTTTGATTACTT GCGCTTGGTGGAGAGTGACGCCGAAGCAGAGACTGTGCGAGAAGTGTATGAGCGTGCCAT CGCCAACGTCCCGCCCATCCAGGAGAAGAGGCACTGGAAGCGCTACATCTATCTTTGGGT CAACTACGCCCTGTATGAGGAGCTGGAGGCAAAGGATCCCGAGAGGACAAGACAGGTTTA CCAAGCCTCTTTGGAACTCATTCCTCATAAAAAGTTCACATTTGCCAAAATGTGGTTGCT ATATGCACAATTTGAAATAAGGCAGAAAAATTTACCATTTGCCAGAAGAGCTTTGGGAAC TTCCATAGGCAAGTGTCCGAAGAACAAGTTGTTTAAAGGTTACATAGAATTGGAGCTACA GCTTCGAGAATTTGACAGATGCCGGAAGCTTTATGAAAAGTTCCTGGAATTTGGACCTGA AAATTGTACCTCTTGGATTAAATTTGCAGAATTAGAGACGATCCTTGGAGATATTGAGAG AGCCCGGGCCATCTATGAGTTAGCCATCAGTCAGCCACGCTTGGACATGCCAGAGGTGCT TTGGAAATCATATATTGATTTTGAAATTGAGCAGGAGGAAACCGAACGAACACGAAATCT TTACCGACGGTTGCTTCAACGGACACAGCATGTCAAGGTATGGATCAGTTTTGCGCAGTT TGAATTGTCTTCAGGGAAAGAAGGAAGCTTGGCTAAATGCAGACAGATCTATGAAGAGGC TAACAAAACCATGCGAAACTGTGAGGAAAAGGAAGAGAGACTTATGCTGCTGGAATCTTG GCGAAGCTTTGAAGATGAATTTGGAACAGTATCGGATAAGGAGAGAGTCGACAAACTCAT GCCAGAGAAGGTCAAGAAGAGAAGAAAGGTCCAGGCTGATGACGGGTCTGATGCAGGCTG GGAAGAGTACTATGATTACATCTTCCCAGAAGATGCTGCCAACCAACCCAACCTCAAACT CCTGGCCATGGCCAAACTCTGGAAGAAACAGCAACAGGAAAAGGAGGCTGGTGAGCAAGA CCCAGATAAAGACATCGCTGAGAGTGAATCCGGACCCTCTTGTTCGTGTTAATAGATGTT TTATTATTTTTATAAATTTATAGTTTGGAACTCTTGCGACTCCTGTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAGAAGAAGTTTGGTGACAGGCGGGGCATTGAAGACATCATCGTGAGCAAACGGAGATT CCAGTATGAGGAGGAAGTGAAGGCTAACCCGCACAACTACGACGCTTGGTTTGATTACTT GCGCTTGGTGGAGAGTGACGCCGAAGCAGAGACTGTGCGAGAAGTGTATGAGCGTGCCAT CGCCAACGTCCCGCCCATCCAGGAGAAGAGGCACTGGAAGCGCTACATCTATCTTTGGGT CAACTACGCCCTGTATGAGGAGCTGGAGGCAAAGGATCCCGAGAGGACAAGACAGGTTTA CCAAGCCTCTTTGGAACTCATTCCTCATAAAAAGTTCACATTTGCCAAAATGTGGTTGCT ATATGCACAATTTGAAATAAGGCAGAAAAATTTACCATTTGCCAGAAGAGCTTTGGGAAC TTCCATAGGCAAGTGTCCGAAGAACAAGTTGTTTAAAGGTTACATAGAATTGGAGCTACA GCTTCGAGAATTTGACAGATGCCGGAAGCTTTATGAAAAGTTCCTGGAATTTGGACCTGA AAATTGTACCTCTTGGATTAAATTTGCAGAATTAGAGACGATCCTTGGAGATATTGAGAG AGCCCGGGCCATCTATGAGTTAGCCATCAGTCAGCCACGCTTGGACATGCCAGAGGTGCT TTGGAAATCATATATTGATTTTGAAATTGAGCAGGAGGAAACCGAACGAACACGAAATCT TTACCGACGGTTGCTTCAACGGACACAGCATGTCAAGGTATGGATCAGTTTTGCGCAGTT TGAATTGTCTTCAGGGAAAGAAGGAAGCTTGGCTAAATGCAGACAGATCTATGAAGAGGC TAACAAAACCATGCGAAACTGTGAGGAAAAGGAAGAGAGACTTATGCTGCTGGAATCTTG GCGAAGCTTTGAAGATGAATTTGGAACAGTATCGGATAAGGAGAGAGTCGACAAACTCAT GCCAGAGAAGGTCAAGAAGAGAAGAAAGGTCCAGGCTGATGACGGGTCTGATGCAGGCTG GGAAGAGTACTATGATTACATCTTCCCAGAAGATGCTGCCAACCAACCCAACCTCAAACT CCTGGCCATGGCCAAACTCTGGAAGAAACAGCAACAGGAAAAGGAGGCTGGTGAGCAAGA CCCAGATAAAGACATCGCTGAGAGTGAATCCGGACCCTCTTGTTCGTGTTAATAGATGTT TTATTATTTTTATAAATTTATAGTTTGGAACTCTTGCGACTCCTGTAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 415-533, + strand, RNAz p=0.533162 | |
| 755-873, + strand, RNAz p=0.73376 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 415-533, + strand, RNAz p=0.533162 | |
| 755-873, + strand, RNAz p=0.73376 |
| Homologous human UTR: 2 entry(ies) | More info |
| Homologous human UTR: 2 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AF318304, + | |
| 5' of AF318304, + |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 81-286, gnl|bosTau2|chr13 (26827521-26827725) | |
| 81-286, gnl|canFam2|chr24 (6304423-6304208) | |
| 81-286, gnl|danRer3|chrNA (38494370-38494600) | |
| 81-286, gnl|dasNov1|scaffold_19676 (1672-1892) | |
| 81-286, gnl|echTel1|scaffold_278937 (38645-38867) | |
| 81-286, gnl|fr1|chrUn (67003696-67003487) | |
| 81-286, gnl|galGal2|chr3 (3796389-3796164) | |
| 81-286, gnl|hg17|chr20 (19970962-19971184) | |
| 81-286, gnl|Hg17|chr20 (19971162-19970961) | |
| 81-286, gnl|loxAfr1|scaffold_3914 (17549-17771) | |
| 81-286, gnl|mm7|chr2 (145666358-145666580) | |
| 81-286, gnl|Mm7|chr2 (145666558-145666357) | |
| 81-286, gnl|monDom2|scaffold_1 (55194829-55195048) | |
| 81-286, gnl|oryCun1|scaffold_174752 (13879-13662) | |
| 81-286, gnl|panTro1|chr21 (19892707-19892929) | |
| 81-286, gnl|rheMac2|chr10 (53353982-53354204) | |
| 81-286, gnl|rn3|chr3 (134451244-134451467) | |
| 81-286, gnl|tetNig1|chr14 (9475489-9475693) | |
| 81-286, gnl|xenTro1|scaffold_352 (1137400-1137178) | |
| 415-658, gnl|bosTau2|chr13 (26831793-26832036) | |
| 415-658, gnl|canFam2|chr24 (6307284-6307015) | |
| 415-658, gnl|danRer3|chrNA (38490771-38491042) | |
| 415-658, gnl|dasNov1|scaffold_16257 (13061-12792) | |
| 415-658, gnl|echTel1|scaffold_28076 (11922-12191) | |
| 415-658, gnl|fr1|chrUn (67004551-67004293) | |
| 415-658, gnl|galGal2|chr3 (3800398-3800124) | |
| 415-658, gnl|hg17|chr20 (19968250-19968519) | |
| 415-658, gnl|Hg17|chr20 (19968493-19968250) | |
| 415-658, gnl|loxAfr1|scaffold_3914 (14655-14924) | |
| 415-658, gnl|mm7|chr2 (145662626-145662896) | |
| 415-658, gnl|Mm7|chr2 (145662869-145662626) | |
| 415-658, gnl|monDom2|scaffold_1 (55188001-55188270) | |
| 415-658, gnl|oryCun1|scaffold_174752 (16190-15921) | |
| 415-658, gnl|panTro1|chr21 (19889907-19890176) | |
| 415-658, gnl|rheMac2|chr10 (53351249-53351518) | |
| 415-658, gnl|rn3|chr3 (134448027-134448297) | |
| 415-658, gnl|tetNig1|chr14 (9474784-9475030) | |
| 415-658, gnl|xenTro1|scaffold_352 (1138992-1138737) | |
| 755-1006, gnl|bosTau2|chr13 (26833679-26833930) | |
| 755-1006, gnl|canFam2|chr24 (6309290-6309014) | |
| 755-1006, gnl|danRer3|chrNA (38485673-38485952) | |
| 755-1006, gnl|dasNov1|scaffold_16257 (15091-14815) | |
| 755-1006, gnl|echTel1|scaffold_28076 (9820-10100) | |
| 755-1006, gnl|fr1|chrUn (67005108-67004838) | |
| 755-1006, gnl|galGal2|chr3 (3801725-3801459) | |
| 755-1006, gnl|hg17|chr20 (19965951-19966227) | |
| 755-1006, gnl|Hg17|chr20 (19966218-19965967) | |
| 755-1006, gnl|loxAfr1|scaffold_3914 (12216-12494) | |
| 755-1006, gnl|mm7|chr2 (145660581-145660867) | |
| 755-1006, gnl|Mm7|chr2 (145660848-145660597) | |
| 755-1006, gnl|monDom2|scaffold_1 (55186215-55186479) | |
| 755-1006, gnl|panTro1|chr21 (19887615-19887891) | |
| 755-1006, gnl|rheMac2|chr10 (53348955-53349231) | |
| 755-1006, gnl|rn3|chr3 (134445955-134446230) | |
| 755-1006, gnl|tetNig1|chr14 (9474256-9474514) | |
| 755-1006, gnl|xenTro1|scaffold_352 (1141024-1140747) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 81-286, gnl|bosTau2|chr13 (26827521-26827725) | |
| 81-286, gnl|canFam2|chr24 (6304423-6304208) | |
| 81-286, gnl|danRer3|chrNA (38494370-38494600) | |
| 81-286, gnl|dasNov1|scaffold_19676 (1672-1892) | |
| 81-286, gnl|echTel1|scaffold_278937 (38645-38867) | |
| 81-286, gnl|fr1|chrUn (67003696-67003487) | |
| 81-286, gnl|galGal2|chr3 (3796389-3796164) | |
| 81-286, gnl|hg17|chr20 (19970962-19971184) | |
| 81-286, gnl|Hg17|chr20 (19971162-19970961) | |
| 81-286, gnl|loxAfr1|scaffold_3914 (17549-17771) | |
| 81-286, gnl|mm7|chr2 (145666358-145666580) | |
| 81-286, gnl|Mm7|chr2 (145666558-145666357) | |
| 81-286, gnl|monDom2|scaffold_1 (55194829-55195048) | |
| 81-286, gnl|oryCun1|scaffold_174752 (13879-13662) | |
| 81-286, gnl|panTro1|chr21 (19892707-19892929) | |
| 81-286, gnl|rheMac2|chr10 (53353982-53354204) | |
| 81-286, gnl|rn3|chr3 (134451244-134451467) | |
| 81-286, gnl|tetNig1|chr14 (9475489-9475693) | |
| 81-286, gnl|xenTro1|scaffold_352 (1137400-1137178) | |
| 415-658, gnl|bosTau2|chr13 (26831793-26832036) | |
| 415-658, gnl|canFam2|chr24 (6307284-6307015) | |
| 415-658, gnl|danRer3|chrNA (38490771-38491042) | |
| 415-658, gnl|dasNov1|scaffold_16257 (13061-12792) | |
| 415-658, gnl|echTel1|scaffold_28076 (11922-12191) | |
| 415-658, gnl|fr1|chrUn (67004551-67004293) | |
| 415-658, gnl|galGal2|chr3 (3800398-3800124) | |
| 415-658, gnl|hg17|chr20 (19968250-19968519) | |
| 415-658, gnl|Hg17|chr20 (19968493-19968250) | |
| 415-658, gnl|loxAfr1|scaffold_3914 (14655-14924) | |
| 415-658, gnl|mm7|chr2 (145662626-145662896) | |
| 415-658, gnl|Mm7|chr2 (145662869-145662626) | |
| 415-658, gnl|monDom2|scaffold_1 (55188001-55188270) | |
| 415-658, gnl|oryCun1|scaffold_174752 (16190-15921) | |
| 415-658, gnl|panTro1|chr21 (19889907-19890176) | |
| 415-658, gnl|rheMac2|chr10 (53351249-53351518) | |
| 415-658, gnl|rn3|chr3 (134448027-134448297) | |
| 415-658, gnl|tetNig1|chr14 (9474784-9475030) | |
| 415-658, gnl|xenTro1|scaffold_352 (1138992-1138737) | |
| 755-1006, gnl|bosTau2|chr13 (26833679-26833930) | |
| 755-1006, gnl|canFam2|chr24 (6309290-6309014) | |
| 755-1006, gnl|danRer3|chrNA (38485673-38485952) | |
| 755-1006, gnl|dasNov1|scaffold_16257 (15091-14815) | |
| 755-1006, gnl|echTel1|scaffold_28076 (9820-10100) | |
| 755-1006, gnl|fr1|chrUn (67005108-67004838) | |
| 755-1006, gnl|galGal2|chr3 (3801725-3801459) | |
| 755-1006, gnl|hg17|chr20 (19965951-19966227) | |
| 755-1006, gnl|Hg17|chr20 (19966218-19965967) | |
| 755-1006, gnl|loxAfr1|scaffold_3914 (12216-12494) | |
| 755-1006, gnl|mm7|chr2 (145660581-145660867) | |
| 755-1006, gnl|Mm7|chr2 (145660848-145660597) | |
| 755-1006, gnl|monDom2|scaffold_1 (55186215-55186479) | |
| 755-1006, gnl|panTro1|chr21 (19887615-19887891) | |
| 755-1006, gnl|rheMac2|chr10 (53348955-53349231) | |
| 755-1006, gnl|rn3|chr3 (134445955-134446230) | |
| 755-1006, gnl|tetNig1|chr14 (9474256-9474514) | |
| 755-1006, gnl|xenTro1|scaffold_352 (1141024-1140747) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| mas (0.210305) | |
| sin (0.174948) | |
| nje (0.16592) | |
| liv (0.146284) | |
| hlv (0.139256) | |
| ese (0.126502) | |
| bla (0.124347) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.210305) | |
| sin (0.174948) | |
| nje (0.16592) | |
| liv (0.146284) | |
| hlv (0.139256) | |
| ese (0.126502) | |
| bla (0.124347) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| eje (0.0988338) | |
| ldo (0.0970026) |