Ss1.1-Pig4-TMW8034A21.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCTTCATTCCTGGCTATATTTCTACTATGAATGGTACAAAAGCATTGGCAATCGAGGAT TTTTGCAAATCTCTGGGTCATGCCTATATAAGGTTCGATTACTCAGGAATTGGAAATTCA GATGGTAACTTAAAAGAATGCACAGTGGGAAAATGGAGAAAAGATGTTCTTTCTATAATT GATGAATTGGCTGAAGGACCACAGATACTGGTTGGATCTAGCCTGGGTGGATGGCTAATG CTTCATGCAGCAATCGCGCGACCACAAAAGGTTGTAGCTCTTGTTGGCATAGCCACAGCT GTAGATGGCCTAGTGACACAGTTTAATCAGCTTCCTGTTGAGACAAAAAAGGATATAGAG ATGAAAGGTGTGTGGGCCATGCCATCAAAATACAGTGAAGAAGGAGTTTATCGCATTCAG TACAGTGTCATTAAAGAAGCTGAGCACCACTGCTTGTTACATAGTCCCATTCCTGTGAAC TGCCCTATAAGATTGCTCCACGGCATGAAGGATGACGTTATTCCCTGGCATACGTCTGTG CAAGTTGCTGACCGAGTAGTCAGCAAAGATGTAGATGTCATCCTCCGAAAAGACAGCGAC CACCGAATGAAGGAAAAAGCGGACCTTCAACTTCTGGTTTACACTATTGATGACTTAATT GATAAGCTTTCAACTGTAATTAACTAGAATCACAGTTTTAGTTGGTTTGTAAACTCATGG ATCCAGAAGGTAGAAGAGATGAAAGACCTTGATAAGTAGGTTTTTCTTATCTCTATTTTG TAAATATCATGTATTTATTCAGTGATGTATTTGCACAAGTGATACAGATCGTGAAGAAAG CATCAGCTGCTGTTTAAAAAAATTCTCTCCTGCCTTCAACCCTTGATTTTTTTTTGTTAA AATATTTCCTATTTTTTTATTCAAGAGATGCTTACTTTATAATGCTTATGTTAACTGTGC CAGCTCCTAATTGTGCTTTCTTCTATTTAGAATTGCTAATAAAGCTTGATTTTTTGTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCTTCATTCCTGGCTATATTTCTACTATGAATGGTACAAAAGCATTGGCAATCGAGGAT TTTTGCAAATCTCTGGGTCATGCCTATATAAGGTTCGATTACTCAGGAATTGGAAATTCA GATGGTAACTTAAAAGAATGCACAGTGGGAAAATGGAGAAAAGATGTTCTTTCTATAATT GATGAATTGGCTGAAGGACCACAGATACTGGTTGGATCTAGCCTGGGTGGATGGCTAATG CTTCATGCAGCAATCGCGCGACCACAAAAGGTTGTAGCTCTTGTTGGCATAGCCACAGCT GTAGATGGCCTAGTGACACAGTTTAATCAGCTTCCTGTTGAGACAAAAAAGGATATAGAG ATGAAAGGTGTGTGGGCCATGCCATCAAAATACAGTGAAGAAGGAGTTTATCGCATTCAG TACAGTGTCATTAAAGAAGCTGAGCACCACTGCTTGTTACATAGTCCCATTCCTGTGAAC TGCCCTATAAGATTGCTCCACGGCATGAAGGATGACGTTATTCCCTGGCATACGTCTGTG CAAGTTGCTGACCGAGTAGTCAGCAAAGATGTAGATGTCATCCTCCGAAAAGACAGCGAC CACCGAATGAAGGAAAAAGCGGACCTTCAACTTCTGGTTTACACTATTGATGACTTAATT GATAAGCTTTCAACTGTAATTAACTAGAATCACAGTTTTAGTTGGTTTGTAAACTCATGG ATCCAGAAGGTAGAAGAGATGAAAGACCTTGATAAGTAGGTTTTTCTTATCTCTATTTTG TAAATATCATGTATTTATTCAGTGATGTATTTGCACAAGTGATACAGATCGTGAAGAAAG CATCAGCTGCTGTTTAAAAAAATTCTCTCCTGCCTTCAACCCTTGATTTTTTTTTGTTAA AATATTTCCTATTTTTTTATTCAAGAGATGCTTACTTTATAATGCTTATGTTAACTGTGC CAGCTCCTAATTGTGCTTTCTTCTATTTAGAATTGCTAATAAAGCTTGATTTTTTGTTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 500-738, - strand, RNAz p=0.925919 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 500-738, - strand, RNAz p=0.925919 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 91-213, gnl|bosTau2|chr1 (32443045-32443168) | |
| 91-213, gnl|canFam2|chr33 (19668123-19668250) | |
| 91-213, gnl|danRer3|chr24 (19149188-19149066) | |
| 91-213, gnl|dasNov1|scaffold_27202 (2444-2358) | |
| 91-213, gnl|echTel1|scaffold_43606 (3665-3554) | |
| 91-213, gnl|fr1|chrUn (57834183-57834308) | |
| 91-213, gnl|galGal2|chr1 (82551347-82551474) | |
| 91-213, gnl|hg17|chr3 (113187790-113187917) | |
| 91-213, gnl|Hg17|chr3 (113187799-113187921) | |
| 91-213, gnl|loxAfr1|scaffold_60926 (7969-7842) | |
| 91-213, gnl|mm7|chr16 (45515174-45515047) | |
| 91-213, gnl|Mm7|chr16 (45515163-45515040) | |
| 91-213, gnl|monDom2|scaffold_24 (6011303-6011430) | |
| 91-213, gnl|oryCun1|scaffold_213529 (319230-319358) | |
| 91-213, gnl|panTro1|chr2 (114777241-114777368) | |
| 91-213, gnl|rheMac2|chr2 (32079720-32079847) | |
| 91-213, gnl|rn3|chr11 (56632266-56632393) | |
| 91-213, gnl|tetNig1|chr6 (2636352-2636473) | |
| 91-213, gnl|xenTro1|scaffold_654 (352136-352257) | |
| 341-972, gnl|bosTau2|chr1 (32448813-32449458) | |
| 341-972, gnl|Hg17|chr3 (113192912-113193573) | |
| 341-972, gnl|Mm7|chr16 (45509487-45508851) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 91-213, gnl|bosTau2|chr1 (32443045-32443168) | |
| 91-213, gnl|canFam2|chr33 (19668123-19668250) | |
| 91-213, gnl|danRer3|chr24 (19149188-19149066) | |
| 91-213, gnl|dasNov1|scaffold_27202 (2444-2358) | |
| 91-213, gnl|echTel1|scaffold_43606 (3665-3554) | |
| 91-213, gnl|fr1|chrUn (57834183-57834308) | |
| 91-213, gnl|galGal2|chr1 (82551347-82551474) | |
| 91-213, gnl|hg17|chr3 (113187790-113187917) | |
| 91-213, gnl|Hg17|chr3 (113187799-113187921) | |
| 91-213, gnl|loxAfr1|scaffold_60926 (7969-7842) | |
| 91-213, gnl|mm7|chr16 (45515174-45515047) | |
| 91-213, gnl|Mm7|chr16 (45515163-45515040) | |
| 91-213, gnl|monDom2|scaffold_24 (6011303-6011430) | |
| 91-213, gnl|oryCun1|scaffold_213529 (319230-319358) | |
| 91-213, gnl|panTro1|chr2 (114777241-114777368) | |
| 91-213, gnl|rheMac2|chr2 (32079720-32079847) | |
| 91-213, gnl|rn3|chr11 (56632266-56632393) | |
| 91-213, gnl|tetNig1|chr6 (2636352-2636473) | |
| 91-213, gnl|xenTro1|scaffold_654 (352136-352257) | |
| 341-972, gnl|bosTau2|chr1 (32448813-32449458) | |
| 341-972, gnl|Hg17|chr3 (113192912-113193573) | |
| 341-972, gnl|Mm7|chr16 (45509487-45508851) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| sme (0.305437) | |
| lin (0.291206) | |
| ova (0.258264) | |
| tra (0.246184) | |
| mgp (0.230681) | |
| hea (0.204499) | |
| nco (0.161734) | |
| isp (0.150376) | |
| sug (0.127291) | |
| spc (0.113366) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (0.305437) | |
| lin (0.291206) | |
| ova (0.258264) | |
| tra (0.246184) | |
| mgp (0.230681) | |
| hea (0.204499) | |
| nco (0.161734) | |
| isp (0.150376) | |
| sug (0.127291) | |
| spc (0.113366) |