Ss1.1-Pig4-TMW8034A24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTTGATTGGGCCAAAACAGAGGATGCCCCGAAGGACAGGCTGTTGACATTTTACCACTT GGCAGATTGCATTGCTGAAAAGCTGAAAGGGCTTTTTACTCTGTTCGCTGGCCACTTGGT GAAGCCTTTTGCTGACACCTTGAACCAGGTGAACATCTCTAAAACAGATGAAGCGTTTTT TGATTCTGAAAATGACCCTGAAAAGTGCTGCTTACTGCTGCAGTTTATTCTGAACTGTTT ATATAAAATCTTCCTTTTTGACACCCAGCATTTTCTCAGTAAAGAGAGAGCAGAAGCCTT GATGATGCCCCTGGTGGATCAGCTGGAAAACAGGCTTGGAGGAGAAGAGAAGTTCCAGGA ACGGGTGACCCAGCACCTGATCCCGTGCCTTGCGCAGTTCTCAGTGGCAGTGGCTGATGA CTCGCTTTGGAAACCGCTCAACTACCAGATTCTGCTGAAGACGAGAGACTCCTCACCCAA GGTTCGATTTGCTGCTCTGATTACAGTGTTAGCACTGGCTGAAAAACTGAGAGAGAATTA CATCGTCTTGTTACCAGAATCCATTCCTTTCTTAGCTGAATTGATGGAAGATGAGTGTGA AGAGGTGGAGCATCAGTGCCAGAAGACTATCCAGCAGCTGGAGGCTGTGCTGGGGGAGCC ACTCCAGGGCTACTTCTAAAACCTCACACTCTGTTGAGAGTTCAGGTTTATTTTTCCTTT TATTGCTGGGTGTTTTTAGGACCATGTTACTTTTGGTGCCTTAACACCTACTTGGACTTC TTCACAAAATCCCCACCTGGTTTATGCAGCCATGTGAGCCTCTCCTGCCGATTGTATAGA ATTACAAAAAGAGTAAACAATACATGGTATTTTTAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTTGATTGGGCCAAAACAGAGGATGCCCCGAAGGACAGGCTGTTGACATTTTACCACTT GGCAGATTGCATTGCTGAAAAGCTGAAAGGGCTTTTTACTCTGTTCGCTGGCCACTTGGT GAAGCCTTTTGCTGACACCTTGAACCAGGTGAACATCTCTAAAACAGATGAAGCGTTTTT TGATTCTGAAAATGACCCTGAAAAGTGCTGCTTACTGCTGCAGTTTATTCTGAACTGTTT ATATAAAATCTTCCTTTTTGACACCCAGCATTTTCTCAGTAAAGAGAGAGCAGAAGCCTT GATGATGCCCCTGGTGGATCAGCTGGAAAACAGGCTTGGAGGAGAAGAGAAGTTCCAGGA ACGGGTGACCCAGCACCTGATCCCGTGCCTTGCGCAGTTCTCAGTGGCAGTGGCTGATGA CTCGCTTTGGAAACCGCTCAACTACCAGATTCTGCTGAAGACGAGAGACTCCTCACCCAA GGTTCGATTTGCTGCTCTGATTACAGTGTTAGCACTGGCTGAAAAACTGAGAGAGAATTA CATCGTCTTGTTACCAGAATCCATTCCTTTCTTAGCTGAATTGATGGAAGATGAGTGTGA AGAGGTGGAGCATCAGTGCCAGAAGACTATCCAGCAGCTGGAGGCTGTGCTGGGGGAGCC ACTCCAGGGCTACTTCTAAAACCTCACACTCTGTTGAGAGTTCAGGTTTATTTTTCCTTT TATTGCTGGGTGTTTTTAGGACCATGTTACTTTTGGTGCCTTAACACCTACTTGGACTTC TTCACAAAATCCCCACCTGGTTTATGCAGCCATGTGAGCCTCTCCTGCCGATTGTATAGA ATTACAAAAAGAGTAAACAATACATGGTATTTTTAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 589-686, + strand, RNAz p=0.623394 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 589-686, + strand, RNAz p=0.623394 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC011983, + |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 2-167, gnl|bosTau2|chr11 (62913077-62912912) | |
| 2-167, gnl|canFam2|chr4 (6540865-6540651) | |
| 2-167, gnl|danRer3|chr12 (8506569-8506356) | |
| 2-167, gnl|dasNov1|scaffold_39958 (5544-5329) | |
| 2-167, gnl|echTel1|scaffold_157879 (3289-3068) | |
| 2-167, gnl|fr1|chrUn (104157862-104157664) | |
| 2-167, gnl|galGal2|chrUn (20210092-20210295) | |
| 2-167, gnl|hg17|chr1 (233044615-233044828) | |
| 2-167, gnl|Hg17|chr1 (233044802-233044637) | |
| 2-167, gnl|loxAfr1|scaffold_18665 (19226-19440) | |
| 2-167, gnl|mm7|chr13 (12395496-12395280) | |
| 2-167, gnl|Mm7|chr13 (12395307-12395472) | |
| 2-167, gnl|monDom2|scaffold_13 (48896515-48896305) | |
| 2-167, gnl|oryCun1|scaffold_207033 (125949-126162) | |
| 2-167, gnl|panTro1|chr1_random (51359888-51359675) | |
| 2-167, gnl|rheMac2|chr1 (220480887-220480674) | |
| 2-167, gnl|rn3|chr17 (68629795-68630011) | |
| 2-167, gnl|tetNig1|chr2 (2325827-2325640) | |
| 2-167, gnl|xenTro1|scaffold_41 (305127-305339) | |
| 320-483, gnl|bosTau2|chr11 (62911633-62911470) | |
| 320-483, gnl|Hg17|chr1 (233043083-233042920) | |
| 320-483, gnl|Mm7|chr13 (12396597-12396760) | |
| 589-876, gnl|bosTau2|chr11 (62908995-62908695) | |
| 589-876, gnl|Hg17|chr1 (233040333-233040010) | |
| 589-876, gnl|Mm7|chr13 (12399517-12399822) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-167, gnl|bosTau2|chr11 (62913077-62912912) | |
| 2-167, gnl|canFam2|chr4 (6540865-6540651) | |
| 2-167, gnl|danRer3|chr12 (8506569-8506356) | |
| 2-167, gnl|dasNov1|scaffold_39958 (5544-5329) | |
| 2-167, gnl|echTel1|scaffold_157879 (3289-3068) | |
| 2-167, gnl|fr1|chrUn (104157862-104157664) | |
| 2-167, gnl|galGal2|chrUn (20210092-20210295) | |
| 2-167, gnl|hg17|chr1 (233044615-233044828) | |
| 2-167, gnl|Hg17|chr1 (233044802-233044637) | |
| 2-167, gnl|loxAfr1|scaffold_18665 (19226-19440) | |
| 2-167, gnl|mm7|chr13 (12395496-12395280) | |
| 2-167, gnl|Mm7|chr13 (12395307-12395472) | |
| 2-167, gnl|monDom2|scaffold_13 (48896515-48896305) | |
| 2-167, gnl|oryCun1|scaffold_207033 (125949-126162) | |
| 2-167, gnl|panTro1|chr1_random (51359888-51359675) | |
| 2-167, gnl|rheMac2|chr1 (220480887-220480674) | |
| 2-167, gnl|rn3|chr17 (68629795-68630011) | |
| 2-167, gnl|tetNig1|chr2 (2325827-2325640) | |
| 2-167, gnl|xenTro1|scaffold_41 (305127-305339) | |
| 320-483, gnl|bosTau2|chr11 (62911633-62911470) | |
| 320-483, gnl|Hg17|chr1 (233043083-233042920) | |
| 320-483, gnl|Mm7|chr13 (12396597-12396760) | |
| 589-876, gnl|bosTau2|chr11 (62908995-62908695) | |
| 589-876, gnl|Hg17|chr1 (233040333-233040010) | |
| 589-876, gnl|Mm7|chr13 (12399517-12399822) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| nms (0.213858) | |
| hea (0.204499) | |
| col (0.195008) | |
| nje (0.16592) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| med (0.116252) | |
| jca (0.11396) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.213858) | |
| hea (0.204499) | |
| col (0.195008) | |
| nje (0.16592) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| med (0.116252) | |
| jca (0.11396) |