Non-Coding RNA Search

Ss1.1-Pig4-TMW8034B17.3

Sequence:


               
               AACTTGGAATCGGCAAAAGTGATGAGGCAGCGGGTGCACTGCAGGGTCCCCTGGTGGCCT
GAGGGACACAGGGTGAGGTTGGGGGAGGCCAGCAGGAGTCCCCAGGGCCTCTCCTAGCTC
CAGGGTCATGCTAACTGAGGGTGCAGTGCTTCCTACATGCCAGGTGCTATGCCAACGCTG
GACAGCTGCACAGGGAAACCTATCAGACCTGTCTTGTCGCTGAGCAGACTGACACTCAAA
AAGGTTAGGCAACTTGCCAACAGTCATGATGCTAGGGACTGAAATGCTGGAGTCGGGATT
GGAACCCAGGAGGCTGCTCTTCTGATAGAGCCATGTGATGAGAGCACTGCCAATGGAGCC
AGCTGCCTGGAACTGAATCCCAGTTTTCCTGCTTCCTGGGCAAGTAAAAACAGTGTTTTC
ATCTGGAAAATGGCACCCATATACCATAATGATATCAGTATCTACCTCATAGGGTTTTTG
GAAGGAATAGGTGAATTATAAAAAGTGCTTTGAACAGTGCTACACAATAGTTTGCAAGAA
TTACTGTTGAGAAAAGCAGCCCTGCAGCCAGGAGCTGGCCTGGCACTCACAGCTAGGCCT
CAGCGTTCTCCTGTTGAGCATAAACAATTTCACAGAACATCGTCAGAAGAGGCCGTGCTG
TGACTGAGGCGAATGAAGACTAGGCCACACCATGATGCCGTCTGAACACAGACAAAACGT
GAACACTGTCTGAGCCGCAGAACAGGCCAAACATCCCCCTGTTCTGCTCATATGAGCGCC
TGCTGCTGTTCTACCAATCACAGCTGGAGCCTTGCTTTGTTCCTCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTTGGAATCGGCAAAAGTGATGAGGCAGCGGGTGCACTGCAGGGTCCCCTGGTGGCCT
GAGGGACACAGGGTGAGGTTGGGGGAGGCCAGCAGGAGTCCCCAGGGCCTCTCCTAGCTC
CAGGGTCATGCTAACTGAGGGTGCAGTGCTTCCTACATGCCAGGTGCTATGCCAACGCTG
GACAGCTGCACAGGGAAACCTATCAGACCTGTCTTGTCGCTGAGCAGACTGACACTCAAA
AAGGTTAGGCAACTTGCCAACAGTCATGATGCTAGGGACTGAAATGCTGGAGTCGGGATT
GGAACCCAGGAGGCTGCTCTTCTGATAGAGCCATGTGATGAGAGCACTGCCAATGGAGCC
AGCTGCCTGGAACTGAATCCCAGTTTTCCTGCTTCCTGGGCAAGTAAAAACAGTGTTTTC
ATCTGGAAAATGGCACCCATATACCATAATGATATCAGTATCTACCTCATAGGGTTTTTG
GAAGGAATAGGTGAATTATAAAAAGTGCTTTGAACAGTGCTACACAATAGTTTGCAAGAA
TTACTGTTGAGAAAAGCAGCCCTGCAGCCAGGAGCTGGCCTGGCACTCACAGCTAGGCCT
CAGCGTTCTCCTGTTGAGCATAAACAATTTCACAGAACATCGTCAGAAGAGGCCGTGCTG
TGACTGAGGCGAATGAAGACTAGGCCACACCATGATGCCGTCTGAACACAGACAAAACGT
GAACACTGTCTGAGCCGCAGAACAGGCCAAACATCCCCCTGTTCTGCTCATATGAGCGCC
TGCTGCTGTTCTACCAATCACAGCTGGAGCCTTGCTTTGTTCCTCCCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               496-805, + strand, RNAz p=0.999416

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               496-805, + strand, RNAz p=0.999416

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               71-828, gnl|bosTau2|chr18 (46232430-46233150)
               

               
               71-828, gnl|Hg17|chr19 (48794809-48794075)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               71-828, gnl|bosTau2|chr18 (46232430-46233150)
               

               
               71-828, gnl|Hg17|chr19 (48794809-48794075)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ret (0.128733)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.128733)

	71-828, gnl\|bosTau2\|chr18 (46232430-46233150)
	71-828, gnl\|Hg17\|chr19 (48794809-48794075)