Ss1.1-Pig4-TMW8034C02.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGCCGGGAGGCGGCGGAGGCGCTGCCCGCGGCCGCCCCGAGTCCCGGGCGAGTGTACG GGCGCCGCTGGCTGGTGCTACTGCTCTTTTCGCTGCTGGGGTTCGCTCAGGGCCTGGTCT GGAACACCTGGGGCCCCATCCAGAACTCGGCGCGGCAGGCCTATGGTTTCTCCAGCTGGG ACATCGCGCTCCTAGTGCTGTGGGGGCCCATCGGCTTCCTGCCCTGCTTCGCATTCATGT GGCTTCTGGACAAGAGAGGTCTTCGGATAACAGTGCTTCTAACATCCTTCCTTATGGTTT TGGGAACTGGTCTAAGATGCATACCTATATCAGACTTAATGCTGAAAAGAAGATTAATCC ATGGAGGACAGCTGCTAAATGGATTGGCAGGTCCGACTGTAATGAATGCAGCTCCATTCC TCTCAACGACGTGGTTCTCTGCAGACGAGCGGGCCACTGCCACAGCTATTGCATCAATGC TCAGTTACCTTGGGGGAGCATGTGCATTTCTAGTTGGACCACTTGTTGTTCCAGCTCCCA ACGGGACAGCGCCTCTTCTTGCTTCGGAGAATAGCAGGGCCCACATTAAAGATCGCATAG AGACCGTATTATATGCAGAATTTGGAGTTGTCTGCTTACTATTTTCTGCAACGCTAGCTT ATTTCCCACCCCGGCCTCCTCTTCCTCCCAGTGTTGCTGCAGCTAGCCAGCGGCTGAGTT ATCGGCGGAGCTTTTGTAGGTTATTAAGCAATTTGAGATTTTTGATGATTGCTTTAGCAT ATGCCATACCACTTGGTGTATTTGCTGGCTGGTCTGGAGTTCTGGACTTAATTTTAACAC CAGTGCATGTCAGCCAAGTAGATGCTGGCTGGATTGGATTTTGGTCCATAGTTGGAGGCT GTGTTGTTGGAATAGCTATAGCAAGGTTTGCAGATTTTATCAGGGGTATGCTGAAACTAA TTCTTCTCCTCCTGTTTTCTGGGGCTACACTGTCATCCACGTGGTTCACGCTGACCTGTT TGAACAGCATCACACACCTGCCTTTAACCACAGTGACACTGTACGCCTCCTGTATTCTCC TGGGAGTGTTCCTGAATAGCAGTATACCTATATTTTTTGAGCTTTTTGTGGAAACCGTCT ACCCAGTTCCGGAAGGAATTACTTGTGGAGTTGTCACTTTTTTAAGTAATATGTTCATGG GAGTACTTTTGTTTTTTCTCACCTTTTATCACACAGAGTTGTCTTGGTTCAACTGGTGCC TTCCCGGGGCGTGTTTGCTCAGTCTCCTCCTCATTCTGTGCTTCAGGGAATCCTATGACA GACTCTATCTTGATGTGGTTGTCTCAGTATAATAGCACAGACTTGAAGGAGCTTAAAAAG AGACTGGAAATCAATACTGCACACTGCACAGTCGCTTGGAATTGCACATCTAACAGGAAA AAAAGGAGAAGAGAGAAACTTCATTCAGAGGTTTTGTTAGGTTACAGATGATGACGTTAA TTTCATTACTACGAGGTAATAATAATGTGGAACTTGAGTGATAATAGGGGATTTTTAAAA CCGTATCAATGGCATACCTGTGCCTGAGTCTGGGGTTACAAGTGTGATGTCTTACACAGA AAGCACTGAGTAATTCCTTCTGTGTTTTGTGCCAGTGCTCAACTACTGATTAATTGTAAT TATGCAAAGAAATCAAGGGTGTCTGTCATGAAGATAACTCCTTCCCTAAGTCACCTATCA GAATAGGAAGAAATGCCACTAACTTCTAAAGAAGTTTAAACCCTATATCAGATTTTAATT ATAAAATAGCCAAGAAGCATATCAGTGATAGAAATTAGCCACGTGTACACTACATTTTTT TCTAATAAAGCCATTTCTTATACGAAAAAAAAAAAAAAAAAAAAAAAAAAACCTTTGGCT ATCCTACTCTATGATGATCAAGTGCTTTTTTCCAGCAACTTCAGAGCGCATACTTTGCGT CTCAGTCTTAACTTATCCTTGTTTCTGTGAAATGCAGTTTCATCTACT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGCCGGGAGGCGGCGGAGGCGCTGCCCGCGGCCGCCCCGAGTCCCGGGCGAGTGTACG GGCGCCGCTGGCTGGTGCTACTGCTCTTTTCGCTGCTGGGGTTCGCTCAGGGCCTGGTCT GGAACACCTGGGGCCCCATCCAGAACTCGGCGCGGCAGGCCTATGGTTTCTCCAGCTGGG ACATCGCGCTCCTAGTGCTGTGGGGGCCCATCGGCTTCCTGCCCTGCTTCGCATTCATGT GGCTTCTGGACAAGAGAGGTCTTCGGATAACAGTGCTTCTAACATCCTTCCTTATGGTTT TGGGAACTGGTCTAAGATGCATACCTATATCAGACTTAATGCTGAAAAGAAGATTAATCC ATGGAGGACAGCTGCTAAATGGATTGGCAGGTCCGACTGTAATGAATGCAGCTCCATTCC TCTCAACGACGTGGTTCTCTGCAGACGAGCGGGCCACTGCCACAGCTATTGCATCAATGC TCAGTTACCTTGGGGGAGCATGTGCATTTCTAGTTGGACCACTTGTTGTTCCAGCTCCCA ACGGGACAGCGCCTCTTCTTGCTTCGGAGAATAGCAGGGCCCACATTAAAGATCGCATAG AGACCGTATTATATGCAGAATTTGGAGTTGTCTGCTTACTATTTTCTGCAACGCTAGCTT ATTTCCCACCCCGGCCTCCTCTTCCTCCCAGTGTTGCTGCAGCTAGCCAGCGGCTGAGTT ATCGGCGGAGCTTTTGTAGGTTATTAAGCAATTTGAGATTTTTGATGATTGCTTTAGCAT ATGCCATACCACTTGGTGTATTTGCTGGCTGGTCTGGAGTTCTGGACTTAATTTTAACAC CAGTGCATGTCAGCCAAGTAGATGCTGGCTGGATTGGATTTTGGTCCATAGTTGGAGGCT GTGTTGTTGGAATAGCTATAGCAAGGTTTGCAGATTTTATCAGGGGTATGCTGAAACTAA TTCTTCTCCTCCTGTTTTCTGGGGCTACACTGTCATCCACGTGGTTCACGCTGACCTGTT TGAACAGCATCACACACCTGCCTTTAACCACAGTGACACTGTACGCCTCCTGTATTCTCC TGGGAGTGTTCCTGAATAGCAGTATACCTATATTTTTTGAGCTTTTTGTGGAAACCGTCT ACCCAGTTCCGGAAGGAATTACTTGTGGAGTTGTCACTTTTTTAAGTAATATGTTCATGG GAGTACTTTTGTTTTTTCTCACCTTTTATCACACAGAGTTGTCTTGGTTCAACTGGTGCC TTCCCGGGGCGTGTTTGCTCAGTCTCCTCCTCATTCTGTGCTTCAGGGAATCCTATGACA GACTCTATCTTGATGTGGTTGTCTCAGTATAATAGCACAGACTTGAAGGAGCTTAAAAAG AGACTGGAAATCAATACTGCACACTGCACAGTCGCTTGGAATTGCACATCTAACAGGAAA AAAAGGAGAAGAGAGAAACTTCATTCAGAGGTTTTGTTAGGTTACAGATGATGACGTTAA TTTCATTACTACGAGGTAATAATAATGTGGAACTTGAGTGATAATAGGGGATTTTTAAAA CCGTATCAATGGCATACCTGTGCCTGAGTCTGGGGTTACAAGTGTGATGTCTTACACAGA AAGCACTGAGTAATTCCTTCTGTGTTTTGTGCCAGTGCTCAACTACTGATTAATTGTAAT TATGCAAAGAAATCAAGGGTGTCTGTCATGAAGATAACTCCTTCCCTAAGTCACCTATCA GAATAGGAAGAAATGCCACTAACTTCTAAAGAAGTTTAAACCCTATATCAGATTTTAATT ATAAAATAGCCAAGAAGCATATCAGTGATAGAAATTAGCCACGTGTACACTACATTTTTT TCTAATAAAGCCATTTCTTATACGAAAAAAAAAAAAAAAAAAAAAAAAAAACCTTTGGCT ATCCTACTCTATGATGATCAAGTGCTTTTTTCCAGCAACTTCAGAGCGCATACTTTGCGT CTCAGTCTTAACTTATCCTTGTTTCTGTGAAATGCAGTTTCATCTACT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1278-1397, - strand, RNAz p=0.917278 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1278-1397, - strand, RNAz p=0.917278 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 1-260, gnl|bosTau2|chr1 (39176197-39175938) | |
| 1-260, gnl|Hg17|chr3 (123996812-123997074) | |
| 1-260, gnl|Mm7|chr16 (35443369-35443110) | |
| 351-618, gnl|bosTau2|chr1 (39145748-39145481) | |
| 351-618, gnl|canFam2|chr33 (28936277-28936598) | |
| 351-618, gnl|danRer3|chr9 (34731077-34731390) | |
| 351-618, gnl|dasNov1|scaffold_108060 (5902-5590) | |
| 351-618, gnl|echTel1|scaffold_185456 (6005-5676) | |
| 351-618, gnl|galGal2|chr7 (27203045-27203354) | |
| 351-618, gnl|hg17|chr3 (124028300-124028620) | |
| 351-618, gnl|Hg17|chr3 (124028335-124028602) | |
| 351-618, gnl|loxAfr1|scaffold_27145 (9419-9099) | |
| 351-618, gnl|mm7|chr16 (35409902-35409577) | |
| 351-618, gnl|Mm7|chr16 (35409864-35409597) | |
| 351-618, gnl|monDom2|scaffold_24 (20488002-20488323) | |
| 351-618, gnl|oryCun1|scaffold_207670 (44253-43936) | |
| 351-618, gnl|panTro1|chr2 (125716936-125717256) | |
| 351-618, gnl|rn3|chr11 (66929597-66929918) | |
| 351-618, gnl|tetNig1|chr2 (18214586-18214321) | |
| 351-618, gnl|xenTro1|scaffold_1516 (46283-45975) | |
| 747-860, gnl|bosTau2|chr1 (39126870-39126757) | |
| 747-860, gnl|Hg17|chr3 (124047298-124047411) | |
| 747-860, gnl|Mm7|chr16 (35404607-35404494) | |
| 924-1053, gnl|bosTau2|chr1 (39113502-39113373) | |
| 924-1053, gnl|canFam2|chr33 (28962122-28962294) | |
| 924-1053, gnl|danRer3|chr9 (34775737-34775883) | |
| 924-1053, gnl|dasNov1|scaffold_222644 (16-187) | |
| 924-1053, gnl|echTel1|scaffold_236657 (1241-1410) | |
| 924-1053, gnl|fr1|chrUn (188686296-188686161) | |
| 924-1053, gnl|galGal2|chr7 (27219150-27219318) | |
| 924-1053, gnl|hg17|chr3 (124061577-124061746) | |
| 924-1053, gnl|Hg17|chr3 (124061610-124061739) | |
| 924-1053, gnl|loxAfr1|scaffold_18513 (11792-11622) | |
| 924-1053, gnl|mm7|chr16 (35393688-35393518) | |
| 924-1053, gnl|Mm7|chr16 (35393652-35393523) | |
| 924-1053, gnl|monDom2|scaffold_24 (20522240-20522410) | |
| 924-1053, gnl|panTro1|chr2 (125750184-125750353) | |
| 924-1053, gnl|rheMac2|chr2 (42849009-42849178) | |
| 924-1053, gnl|rn3|chr11 (66946840-66947010) | |
| 924-1053, gnl|tetNig1|chr2 (18205797-18205639) | |
| 924-1053, gnl|xenTro1|scaffold_1516 (40736-40583) | |
| 1069-1554, gnl|bosTau2|chr11 (52315901-52315429) | |
| 1069-1554, gnl|Hg17|chr3 (124073967-124081117) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-260, gnl|bosTau2|chr1 (39176197-39175938) | |
| 1-260, gnl|Hg17|chr3 (123996812-123997074) | |
| 1-260, gnl|Mm7|chr16 (35443369-35443110) | |
| 351-618, gnl|bosTau2|chr1 (39145748-39145481) | |
| 351-618, gnl|canFam2|chr33 (28936277-28936598) | |
| 351-618, gnl|danRer3|chr9 (34731077-34731390) | |
| 351-618, gnl|dasNov1|scaffold_108060 (5902-5590) | |
| 351-618, gnl|echTel1|scaffold_185456 (6005-5676) | |
| 351-618, gnl|galGal2|chr7 (27203045-27203354) | |
| 351-618, gnl|hg17|chr3 (124028300-124028620) | |
| 351-618, gnl|Hg17|chr3 (124028335-124028602) | |
| 351-618, gnl|loxAfr1|scaffold_27145 (9419-9099) | |
| 351-618, gnl|mm7|chr16 (35409902-35409577) | |
| 351-618, gnl|Mm7|chr16 (35409864-35409597) | |
| 351-618, gnl|monDom2|scaffold_24 (20488002-20488323) | |
| 351-618, gnl|oryCun1|scaffold_207670 (44253-43936) | |
| 351-618, gnl|panTro1|chr2 (125716936-125717256) | |
| 351-618, gnl|rn3|chr11 (66929597-66929918) | |
| 351-618, gnl|tetNig1|chr2 (18214586-18214321) | |
| 351-618, gnl|xenTro1|scaffold_1516 (46283-45975) | |
| 747-860, gnl|bosTau2|chr1 (39126870-39126757) | |
| 747-860, gnl|Hg17|chr3 (124047298-124047411) | |
| 747-860, gnl|Mm7|chr16 (35404607-35404494) | |
| 924-1053, gnl|bosTau2|chr1 (39113502-39113373) | |
| 924-1053, gnl|canFam2|chr33 (28962122-28962294) | |
| 924-1053, gnl|danRer3|chr9 (34775737-34775883) | |
| 924-1053, gnl|dasNov1|scaffold_222644 (16-187) | |
| 924-1053, gnl|echTel1|scaffold_236657 (1241-1410) | |
| 924-1053, gnl|fr1|chrUn (188686296-188686161) | |
| 924-1053, gnl|galGal2|chr7 (27219150-27219318) | |
| 924-1053, gnl|hg17|chr3 (124061577-124061746) | |
| 924-1053, gnl|Hg17|chr3 (124061610-124061739) | |
| 924-1053, gnl|loxAfr1|scaffold_18513 (11792-11622) | |
| 924-1053, gnl|mm7|chr16 (35393688-35393518) | |
| 924-1053, gnl|Mm7|chr16 (35393652-35393523) | |
| 924-1053, gnl|monDom2|scaffold_24 (20522240-20522410) | |
| 924-1053, gnl|panTro1|chr2 (125750184-125750353) | |
| 924-1053, gnl|rheMac2|chr2 (42849009-42849178) | |
| 924-1053, gnl|rn3|chr11 (66946840-66947010) | |
| 924-1053, gnl|tetNig1|chr2 (18205797-18205639) | |
| 924-1053, gnl|xenTro1|scaffold_1516 (40736-40583) | |
| 1069-1554, gnl|bosTau2|chr11 (52315901-52315429) | |
| 1069-1554, gnl|Hg17|chr3 (124073967-124081117) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| spc (0.453463) | |
| bfe (0.449573) | |
| kid (0.389206) | |
| mgm (0.360685) | |
| vin (0.332557) | |
| liv (0.292569) | |
| hea (0.204499) | |
| col (0.195008) | |
| gul (0.177588) | |
| ill (0.175593) | |
| nje (0.16592) | |
| mga (0.160205) | |
| lun (0.150489) | |
| lin (0.145603) | |
| ute (0.132784) | |
| jca (0.11396) | |
| jej (0.0989218) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spc (0.453463) | |
| bfe (0.449573) | |
| kid (0.389206) | |
| mgm (0.360685) | |
| vin (0.332557) | |
| liv (0.292569) | |
| hea (0.204499) | |
| col (0.195008) | |
| gul (0.177588) | |
| ill (0.175593) | |
| nje (0.16592) | |
| mga (0.160205) | |
| lun (0.150489) | |
| lin (0.145603) | |
| ute (0.132784) | |
| jca (0.11396) | |
| jej (0.0989218) |