Non-Coding RNA Search

Ss1.1-Pig4-TMW8034C07.3

Sequence:


               
               AGAGCACCGAAGCTCCAGCGGCCATGGCGCGGAAGAAGGTGCGGCCGCGGCTGATCGCCG
AGCTGGCCCGCCGCGTGAGGGCCCTGCGCGAGCAGCGGGAACGGCCGCGCGATTCGCAGC
GCTACGCCCTGGACTACGAGACGATGATGCGGCCGCACTCAGGCAACCGGCTGCCGATGC
GAGCCTGGGCCGACGTGCGCCACGAGAGCCGCCTCCTGCAGTTGCTCAACCGCCTGCCGC
TCTTCGGCTTGGGCCGCCTCGTCACGCGCAAGTCCTGGCTCTGGCAGCACGACGAGCCAT
GCTACTGGCGCCTCACGCGGGTCCGGCCCGACTACGCAGCGGAGAACTTGGACCACGGGA
AGGCCTGGGGCATCCTGACTTTCAAAGGGAAGACGGAGAGTGAGGCTCGAGAGATAGAAC
AGGTCATGTACCACGACTGGCGGCTGGTGCCCAAGCACGAGGAGGAGGCCTTCACGGCTT
TCACGCTGGTGCCGGAGGACACCCCGCTCTCTGTGCCCTACCCGCCGCTCCTGCGGGCTA
TGATTCTAGCACAGCGACAGAAGTACGGAGACACCAGCACGGAGGAGCCAATGCTGAATC
TGGAGAGGGCCCGCATTGATCCCTGGGACTATCCTGCGAAACTGGAAGCGAAGACAAAGA
CCAAAGGCGCTGCCGTGTGAAATGCCAGAAGCCGCGGGCAGCTGGAGGCAGGGTGTGAGG
CTATCTGACCTTCAGATCCAACATTGCGATTCAGTGTTTGGGTGGGAAAAGGTGCGGCCA
GATCCCGCACCTAGTGTCTTTCCTCTGTCCCTGCTGCCCCAACGCCTAGGTCTCAGTGAG
GGAGCCTCACAGGAGGTGGCTGCTGGGGGGAAGCTGGAAGCAGCAGGGCTAGCTGGGGTA
GAGCCCCCTTGCTGGCACCTTTCACTTCCAGGTGGGCGCCCCTCCGCATCACCTGTTGCC
TCTGCCAGGACCCAGGCAGCAACCCAACGCAAATAAAAGCACATCTAGTAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGCACCGAAGCTCCAGCGGCCATGGCGCGGAAGAAGGTGCGGCCGCGGCTGATCGCCG
AGCTGGCCCGCCGCGTGAGGGCCCTGCGCGAGCAGCGGGAACGGCCGCGCGATTCGCAGC
GCTACGCCCTGGACTACGAGACGATGATGCGGCCGCACTCAGGCAACCGGCTGCCGATGC
GAGCCTGGGCCGACGTGCGCCACGAGAGCCGCCTCCTGCAGTTGCTCAACCGCCTGCCGC
TCTTCGGCTTGGGCCGCCTCGTCACGCGCAAGTCCTGGCTCTGGCAGCACGACGAGCCAT
GCTACTGGCGCCTCACGCGGGTCCGGCCCGACTACGCAGCGGAGAACTTGGACCACGGGA
AGGCCTGGGGCATCCTGACTTTCAAAGGGAAGACGGAGAGTGAGGCTCGAGAGATAGAAC
AGGTCATGTACCACGACTGGCGGCTGGTGCCCAAGCACGAGGAGGAGGCCTTCACGGCTT
TCACGCTGGTGCCGGAGGACACCCCGCTCTCTGTGCCCTACCCGCCGCTCCTGCGGGCTA
TGATTCTAGCACAGCGACAGAAGTACGGAGACACCAGCACGGAGGAGCCAATGCTGAATC
TGGAGAGGGCCCGCATTGATCCCTGGGACTATCCTGCGAAACTGGAAGCGAAGACAAAGA
CCAAAGGCGCTGCCGTGTGAAATGCCAGAAGCCGCGGGCAGCTGGAGGCAGGGTGTGAGG
CTATCTGACCTTCAGATCCAACATTGCGATTCAGTGTTTGGGTGGGAAAAGGTGCGGCCA
GATCCCGCACCTAGTGTCTTTCCTCTGTCCCTGCTGCCCCAACGCCTAGGTCTCAGTGAG
GGAGCCTCACAGGAGGTGGCTGCTGGGGGGAAGCTGGAAGCAGCAGGGCTAGCTGGGGTA
GAGCCCCCTTGCTGGCACCTTTCACTTCCAGGTGGGCGCCCCTCCGCATCACCTGTTGCC
TCTGCCAGGACCCAGGCAGCAACCCAACGCAAATAAAAGCACATCTAGTAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               RT34_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               RT34_HUMAN

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               20-344, gnl|bosTau2|chr25 (2851570-2851894)
               

               
               20-344, gnl|Hg17|chr16 (1763125-1762801)
               

               
               20-344, gnl|Mm7|chr17 (23078321-23078644)
               


               
               386-702, gnl|bosTau2|chr25 (2852172-2852488)
               

               
               386-702, gnl|Hg17|chr16 (1762517-1762201)
               

               
               386-702, gnl|Mm7|chr17 (23078942-23079239)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-344, gnl|bosTau2|chr25 (2851570-2851894)
               

               
               20-344, gnl|Hg17|chr16 (1763125-1762801)
               

               
               20-344, gnl|Mm7|chr17 (23078321-23078644)
               


               
               386-702, gnl|bosTau2|chr25 (2852172-2852488)
               

               
               386-702, gnl|Hg17|chr16 (1762517-1762201)
               

               
               386-702, gnl|Mm7|chr17 (23078942-23079239)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               cga (0.558191)
               

               
               mcp (0.341297)
               

               
               pla (0.267344)
               

               
               nmm (0.265604)
               

               
               cov (0.264306)
               

               
               eep (0.245128)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               cly (0.120642)
               

               
               jca (0.11396)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.558191)
               

               
               mcp (0.341297)
               

               
               pla (0.267344)
               

               
               nmm (0.265604)
               

               
               cov (0.264306)
               

               
               eep (0.245128)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               cly (0.120642)
               

               
               jca (0.11396)

	20-344, gnl\|bosTau2\|chr25 (2851570-2851894)
	20-344, gnl\|Hg17\|chr16 (1763125-1762801)
	20-344, gnl\|Mm7\|chr17 (23078321-23078644)

	386-702, gnl\|bosTau2\|chr25 (2852172-2852488)
	386-702, gnl\|Hg17\|chr16 (1762517-1762201)
	386-702, gnl\|Mm7\|chr17 (23078942-23079239)

	cga (0.558191)
	mcp (0.341297)
	pla (0.267344)
	nmm (0.265604)
	cov (0.264306)
	eep (0.245128)
	col (0.195008)
	nep (0.183925)
	ill (0.175593)
	csp (0.161186)
	cli (0.152812)
	eli (0.151814)
	cag (0.151194)
	hyp (0.142837)
	hlv (0.139256)
	cly (0.120642)
	jca (0.11396)