Ss1.1-Pig4-TMW8034C23.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGAAGGCTGTCATCAGTACAGCTTAACAATAGAGCAGTTGAAACAAAAAGCAGATAAAA GGGTCAGAAGTGTTCGGTATAAAGTAATAGAAGATTACAGTGGCTCCTGCTGTCCTTTGA ATAAAGGGATCAAAACCTTCTTCACCAGCCCCTGCACGGAAGAGCCTCGGATAAGGCTCC AGAAAGGGGAGTTCGTTTTAGCCACAAGGGGGTTACGATACTGGTTGTATGGAGATAAAA TTCTTGATGACTCCATTATAGAAGGTGTTTCAAGAGTAAGAGGATGGTTCCCTAGAAACT GTGTGGAAAAATGTCCGTGCGATACTGAAACAGAATCAGCCCCAGAGGGCGAGAAGAAAA ATAGATAGCCACTGTTAAAGCAAAATTACTCTAATTCCGCTCCATTACTTGAAAATTGTA CATATTACTAAAGAATTATGCAATGAGCCTACTCTGGTTAAGGTGTTCTTTTCCTCAAAG GTGCCCTAGTGCCATGAGCTAAATATTTTTATTACCATTTGAAATGGAAAAGCCATTCTG CACATGCCTTTGAATTCCTGCGCCTCTCTGCCACCTCACCCTCTCCTCAGAAGGAAAAAC ACTTCACCCAAGTAAGTCGATTGCATTTTCTCCAGGATTTTGTAATGCACTGCACAGGAT GGACCTCACCTGCAGATAGAGTTCTCCCTTTGCCAGGAGCATCTGCATGTGATGCTTTTA TCCTCTTTTCCTCTCAGCCGAAATTTCTTATGTAATACTCTAGATACTGTAGATCTTAAT TTGTCAGATTCAGTATAAGCTCAGATTTTATTACTTGTCTTTTAATAACAAAGATTTTGT CAAATCAAATAAAGATCAATGTCTGTATAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGAAGGCTGTCATCAGTACAGCTTAACAATAGAGCAGTTGAAACAAAAAGCAGATAAAA GGGTCAGAAGTGTTCGGTATAAAGTAATAGAAGATTACAGTGGCTCCTGCTGTCCTTTGA ATAAAGGGATCAAAACCTTCTTCACCAGCCCCTGCACGGAAGAGCCTCGGATAAGGCTCC AGAAAGGGGAGTTCGTTTTAGCCACAAGGGGGTTACGATACTGGTTGTATGGAGATAAAA TTCTTGATGACTCCATTATAGAAGGTGTTTCAAGAGTAAGAGGATGGTTCCCTAGAAACT GTGTGGAAAAATGTCCGTGCGATACTGAAACAGAATCAGCCCCAGAGGGCGAGAAGAAAA ATAGATAGCCACTGTTAAAGCAAAATTACTCTAATTCCGCTCCATTACTTGAAAATTGTA CATATTACTAAAGAATTATGCAATGAGCCTACTCTGGTTAAGGTGTTCTTTTCCTCAAAG GTGCCCTAGTGCCATGAGCTAAATATTTTTATTACCATTTGAAATGGAAAAGCCATTCTG CACATGCCTTTGAATTCCTGCGCCTCTCTGCCACCTCACCCTCTCCTCAGAAGGAAAAAC ACTTCACCCAAGTAAGTCGATTGCATTTTCTCCAGGATTTTGTAATGCACTGCACAGGAT GGACCTCACCTGCAGATAGAGTTCTCCCTTTGCCAGGAGCATCTGCATGTGATGCTTTTA TCCTCTTTTCCTCTCAGCCGAAATTTCTTATGTAATACTCTAGATACTGTAGATCTTAAT TTGTCAGATTCAGTATAAGCTCAGATTTTATTACTTGTCTTTTAATAACAAAGATTTTGT CAAATCAAATAAAGATCAATGTCTGTATAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 72-220, gnl|bosTau2|chr26 (21354179-21354031) | |
| 72-220, gnl|canFam2|chr28 (26482133-26482294) | |
| 72-220, gnl|danRer3|chr12 (29122091-29122245) | |
| 72-220, gnl|dasNov1|scaffold_1276 (150765-150604) | |
| 72-220, gnl|echTel1|scaffold_319465 (127637-127476) | |
| 72-220, gnl|fr1|chrUn (62911234-62911395) | |
| 72-220, gnl|galGal2|chr6 (25787848-25788001) | |
| 72-220, gnl|hg17|chr10 (114182119-114182280) | |
| 72-220, gnl|Hg17|chr10 (114182269-114182121) | |
| 72-220, gnl|loxAfr1|scaffold_4278 (71893-72054) | |
| 72-220, gnl|mm7|chr19 (55216920-55217081) | |
| 72-220, gnl|Mm7|chr19 (55217070-55216922) | |
| 72-220, gnl|monDom2|scaffold_14 (50084653-50084492) | |
| 72-220, gnl|oryCun1|scaffold_215429 (40100-39939) | |
| 72-220, gnl|panTro1|chr8 (116109830-116109991) | |
| 72-220, gnl|rheMac2|chr9 (112092299-112092460) | |
| 72-220, gnl|rn3|chr1 (261815641-261815802) | |
| 72-220, gnl|tetNig1|chr2_random (539994-539837) | |
| 72-220, gnl|xenTro1|scaffold_510 (874355-874201) | |
| 263-866, gnl|bosTau2|chr26 (21352918-21352322) | |
| 263-866, gnl|Hg17|chr10 (114180657-114180057) | |
| 263-866, gnl|Mm7|chr19 (55213124-55212559) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 72-220, gnl|bosTau2|chr26 (21354179-21354031) | |
| 72-220, gnl|canFam2|chr28 (26482133-26482294) | |
| 72-220, gnl|danRer3|chr12 (29122091-29122245) | |
| 72-220, gnl|dasNov1|scaffold_1276 (150765-150604) | |
| 72-220, gnl|echTel1|scaffold_319465 (127637-127476) | |
| 72-220, gnl|fr1|chrUn (62911234-62911395) | |
| 72-220, gnl|galGal2|chr6 (25787848-25788001) | |
| 72-220, gnl|hg17|chr10 (114182119-114182280) | |
| 72-220, gnl|Hg17|chr10 (114182269-114182121) | |
| 72-220, gnl|loxAfr1|scaffold_4278 (71893-72054) | |
| 72-220, gnl|mm7|chr19 (55216920-55217081) | |
| 72-220, gnl|Mm7|chr19 (55217070-55216922) | |
| 72-220, gnl|monDom2|scaffold_14 (50084653-50084492) | |
| 72-220, gnl|oryCun1|scaffold_215429 (40100-39939) | |
| 72-220, gnl|panTro1|chr8 (116109830-116109991) | |
| 72-220, gnl|rheMac2|chr9 (112092299-112092460) | |
| 72-220, gnl|rn3|chr1 (261815641-261815802) | |
| 72-220, gnl|tetNig1|chr2_random (539994-539837) | |
| 72-220, gnl|xenTro1|scaffold_510 (874355-874201) | |
| 263-866, gnl|bosTau2|chr26 (21352918-21352322) | |
| 263-866, gnl|Hg17|chr10 (114180657-114180057) | |
| 263-866, gnl|Mm7|chr19 (55213124-55212559) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| rec (0.346141) | |
| hyp (0.285673) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| sug (0.254582) | |
| tes (0.207814) | |
| aor (0.195274) | |
| mga (0.160205) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| fat (0.147427) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| thg (0.126791) | |
| bla (0.124347) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| rec (0.346141) | |
| hyp (0.285673) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| sug (0.254582) | |
| tes (0.207814) | |
| aor (0.195274) | |
| mga (0.160205) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| fat (0.147427) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| thg (0.126791) | |
| bla (0.124347) |