Non-Coding RNA Search

Ss1.1-Pig4-TMW8034D06.5

Sequence:


               
               TTGGATCATGCCGTTACATTTTTTTCTCATTTCGATGCTGTTGGGCCTTAGTTTTTATAT
TGGTTTAAAGAACTATTCGTACTTAAGAATCTAGGAAACATGACCATTGATTGTCATTTA
ATCAACTTTAATATTCCACTGAAATAAATGTGGTAACTTTTCAGTACCAGATTATTAACA
GTAGCATTTCCAAAAGACACTTGCACAGACTCACACTTCCCAATCAAATCATCTGACCAT
ACAGTTATTCCCATGAAAGGCAGAATGTTTGAAAATTAATCTAGTTTTCTGTACATTTAA
AATTTGATTGAGAAGGTGACAACTGGCTCTTATCCAGTCTTCCTTCATATCAGTTTTCTG
ATAGACCACTATTGGCAAACAGTAATCTGTCAACTACCAAATGTGTAAAATTTTCTGTAT
TTCACTTTGTCTTATTTGTAAATAGTGAACTAAAACTTCTGGCAGATCAGCAACATTTGC
TGAGCCTGTTTTTTAAGCTAATATGTATTCTTACTAATGTTCCTATCAAGAATGGATTTG
TAATATATGCTGTCTATTTCTAATGTTCACATTCATATTTTGAGGTTCTATCTTATTTTA
ATAGAGAACAGACTTCTCAGAAAATCTTCAGAAGCAGCTTATTATTAAAATATCAAAATA
TTGAAATAAACCCGGTGGGGTTAGATTACTCATCCGTCCACCAAGTGGGACATTTGCATG
GACTGGGGGCTTAAAGGACTTAAAAGAGACCTGTAAGTATATCCTGAAAATGAGCCAATC
AATCCCCACTTGAATGGTTACTGGAGTAAACCCACCTTTACTACCCTGATTTCAGCACCT
GAGGCAGATAAACCACCTTGGCTCTGTTTTTTTCTGCTTTTCATTTGTGATGCTCAGATC
CAAGATACGTGTGCTAGACTGTACAGGCTTCTCTTTTGTTGGGTTAAAAATTTTTAGTCC
TATGTTTGTATGGACATGTTAGAATGTAAAGTGACCAAAATAGAAGACTTGCCATTAGGT
ATTTTTCAGACGTCAGCAGATTTGTGGCAGATAATTTCTTTTTAAAAATTCAGCTTAAAC
AGTTCAGGCAGTAGACTACTTGGGAAAACATTATTTGACATAATTGTCTAAGAGGTAAAT
ATTTTTTAGTGCGTATTGAACCAAATAAAGTGCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGATCATGCCGTTACATTTTTTTCTCATTTCGATGCTGTTGGGCCTTAGTTTTTATAT
TGGTTTAAAGAACTATTCGTACTTAAGAATCTAGGAAACATGACCATTGATTGTCATTTA
ATCAACTTTAATATTCCACTGAAATAAATGTGGTAACTTTTCAGTACCAGATTATTAACA
GTAGCATTTCCAAAAGACACTTGCACAGACTCACACTTCCCAATCAAATCATCTGACCAT
ACAGTTATTCCCATGAAAGGCAGAATGTTTGAAAATTAATCTAGTTTTCTGTACATTTAA
AATTTGATTGAGAAGGTGACAACTGGCTCTTATCCAGTCTTCCTTCATATCAGTTTTCTG
ATAGACCACTATTGGCAAACAGTAATCTGTCAACTACCAAATGTGTAAAATTTTCTGTAT
TTCACTTTGTCTTATTTGTAAATAGTGAACTAAAACTTCTGGCAGATCAGCAACATTTGC
TGAGCCTGTTTTTTAAGCTAATATGTATTCTTACTAATGTTCCTATCAAGAATGGATTTG
TAATATATGCTGTCTATTTCTAATGTTCACATTCATATTTTGAGGTTCTATCTTATTTTA
ATAGAGAACAGACTTCTCAGAAAATCTTCAGAAGCAGCTTATTATTAAAATATCAAAATA
TTGAAATAAACCCGGTGGGGTTAGATTACTCATCCGTCCACCAAGTGGGACATTTGCATG
GACTGGGGGCTTAAAGGACTTAAAAGAGACCTGTAAGTATATCCTGAAAATGAGCCAATC
AATCCCCACTTGAATGGTTACTGGAGTAAACCCACCTTTACTACCCTGATTTCAGCACCT
GAGGCAGATAAACCACCTTGGCTCTGTTTTTTTCTGCTTTTCATTTGTGATGCTCAGATC
CAAGATACGTGTGCTAGACTGTACAGGCTTCTCTTTTGTTGGGTTAAAAATTTTTAGTCC
TATGTTTGTATGGACATGTTAGAATGTAAAGTGACCAAAATAGAAGACTTGCCATTAGGT
ATTTTTCAGACGTCAGCAGATTTGTGGCAGATAATTTCTTTTTAAAAATTCAGCTTAAAC
AGTTCAGGCAGTAGACTACTTGGGAAAACATTATTTGACATAATTGTCTAAGAGGTAAAT
ATTTTTTAGTGCGTATTGAACCAAATAAAGTGCTCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               284-483, - strand, RNAz p=0.969593

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               284-483, - strand, RNAz p=0.969593

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1176, gnl|bosTau2|chr3 (26768973-26770172)
               

               
               1-1176, gnl|Hg17|chr1 (114651796-114650596)
               

               
               1-1176, gnl|Mm7|chr3 (103148349-103149524)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1176, gnl|bosTau2|chr3 (26768973-26770172)
               

               
               1-1176, gnl|Hg17|chr1 (114651796-114650596)
               

               
               1-1176, gnl|Mm7|chr3 (103148349-103149524)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               pro (0.512033)
               

               
               sag (0.182715)
               

               
               ton (0.1755)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               sag (0.182715)
               

               
               ton (0.1755)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)

	1-1176, gnl\|bosTau2\|chr3 (26768973-26770172)
	1-1176, gnl\|Hg17\|chr1 (114651796-114650596)
	1-1176, gnl\|Mm7\|chr3 (103148349-103149524)

	pro (0.512033)
	sag (0.182715)
	ton (0.1755)
	pla (0.133672)
	kid (0.129735)
	ova (0.129132)
	ret (0.128733)