Ss1.1-Pig4-TMW8034D21.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACAAGGTGGCAGGACTCTTCCCCCGCCCAACCTTCAAAGACAAGTCCACATACGTTGAGT CCTCGACAAAAGTGTATGACGATATGGCGTTCCGGTACCTGTCCTGGATCCTCTTCCCAC TCCTGGGCTGCTACGCTGTCTACAGCCTCCTTTACCTGGAGCACAAGGGCTGGTACTCCT GGGTGCTCAGCATGCTTTACGGCTTCCTGCTGACCTTTGGCTTCATCACCATGACACCCC AGCTCTTCATCAACTACAAGCTCAAGTCCGTAGCCCACCTGCCCTGGCGCATGCTCACCT ACAAGGCCCTCAACACCTTCATCGATGACCTGTTTGCCTTTGTCATCAAGATGCCTGTTA TGTACCGGATCGGCTGCCTGCGGGACGATGTGGTCTTCTTCATCTACCTCTACCAACGGT GGATCTACCGCGTCGACCCCACGCGGGTTAACGAGTTTGGCATGAGTGGCGAGGCTCCGA CAGCAGCTGCCCCCGTGGCCGAGGCCCCGACAGCGGCAGGGGCCCTCCCTCCTGCCCCCG CCACCGCCAGCGAGGAGGCCTCCGTGCCCCTGCCCGCCAAGCCTACCCAGGGGGCCGGCT CTGCCAGCGAGCCCCAGGAAGCCCCTCCAAAGCCAGCAGAGGACAAAAAAAGGGATTAGC TGCTCCTGGTCCTCCTCATCCGCTCGGGCTCCCGGTGACCACCATCCCCGCCGCCCCGGC CCCCTTGCCTCCCCTCCCCGTTGCCCTTCCCTTGGACAGATCGGGCCGGGGCCCAGGGTG TGATGTGGGGGCCGGGGCAGGCCAGGGCACGTCATTTGTGGAGGCGCCGTCCGTCTGTTC CTCTGTGTTTCTAGCCATCTTGCCCCGCCAGCCCAGCACCATTGGGAATCATGGTGAAGC CGACGTGGCGCTGCCGAGGGGGTGGGCCAGGCAGGGGAGGGGCCGGGGCCCCTCTGGGGA CGCCCGTGGCCATCCATCATCTTGTCCCTCGATCCCCCATTGCCCCCCTCCTCCCGGACC GCCGCCCTTTAACACAGTCTGGATTTAATAAATTCACATGGGTGTTTAACTTAAACTCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACAAGGTGGCAGGACTCTTCCCCCGCCCAACCTTCAAAGACAAGTCCACATACGTTGAGT CCTCGACAAAAGTGTATGACGATATGGCGTTCCGGTACCTGTCCTGGATCCTCTTCCCAC TCCTGGGCTGCTACGCTGTCTACAGCCTCCTTTACCTGGAGCACAAGGGCTGGTACTCCT GGGTGCTCAGCATGCTTTACGGCTTCCTGCTGACCTTTGGCTTCATCACCATGACACCCC AGCTCTTCATCAACTACAAGCTCAAGTCCGTAGCCCACCTGCCCTGGCGCATGCTCACCT ACAAGGCCCTCAACACCTTCATCGATGACCTGTTTGCCTTTGTCATCAAGATGCCTGTTA TGTACCGGATCGGCTGCCTGCGGGACGATGTGGTCTTCTTCATCTACCTCTACCAACGGT GGATCTACCGCGTCGACCCCACGCGGGTTAACGAGTTTGGCATGAGTGGCGAGGCTCCGA CAGCAGCTGCCCCCGTGGCCGAGGCCCCGACAGCGGCAGGGGCCCTCCCTCCTGCCCCCG CCACCGCCAGCGAGGAGGCCTCCGTGCCCCTGCCCGCCAAGCCTACCCAGGGGGCCGGCT CTGCCAGCGAGCCCCAGGAAGCCCCTCCAAAGCCAGCAGAGGACAAAAAAAGGGATTAGC TGCTCCTGGTCCTCCTCATCCGCTCGGGCTCCCGGTGACCACCATCCCCGCCGCCCCGGC CCCCTTGCCTCCCCTCCCCGTTGCCCTTCCCTTGGACAGATCGGGCCGGGGCCCAGGGTG TGATGTGGGGGCCGGGGCAGGCCAGGGCACGTCATTTGTGGAGGCGCCGTCCGTCTGTTC CTCTGTGTTTCTAGCCATCTTGCCCCGCCAGCCCAGCACCATTGGGAATCATGGTGAAGC CGACGTGGCGCTGCCGAGGGGGTGGGCCAGGCAGGGGAGGGGCCGGGGCCCCTCTGGGGA CGCCCGTGGCCATCCATCATCTTGTCCCTCGATCCCCCATTGCCCCCCTCCTCCCGGACC GCCGCCCTTTAACACAGTCTGGATTTAATAAATTCACATGGGTGTTTAACTTAAACTCCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 921-1038, - strand, RNAz p=0.570047 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 921-1038, - strand, RNAz p=0.570047 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 293-422, gnl|bosTau2|chr20 (42636095-42636223) | |
| 293-422, gnl|canFam2|chr1 (113362540-113362440) | |
| 293-422, gnl|canFam2|chr34 (14282450-14282315) | |
| 293-422, gnl|danRer3|chr15 (14041262-14041358) | |
| 293-422, gnl|danRer3|chr20 (20293701-20293564) | |
| 293-422, gnl|dasNov1|scaffold_116825 (4178-4278) | |
| 293-422, gnl|dasNov1|scaffold_94582 (3514-3375) | |
| 293-422, gnl|echTel1|scaffold_218084 (1268-1382) | |
| 293-422, gnl|echTel1|scaffold_267263 (25071-25171) | |
| 293-422, gnl|fr1|chrUn (87387163-87387063) | |
| 293-422, gnl|fr1|chrUn (280368050-280367930) | |
| 293-422, gnl|hg17|chr19 (50187405-50187505) | |
| 293-422, gnl|hg17|chr5 (1373725-1373865) | |
| 293-422, gnl|Hg17|chr5 (1373864-1373730) | |
| 293-422, gnl|loxAfr1|scaffold_35372 (28675-28775) | |
| 293-422, gnl|loxAfr1|scaffold_47782 (12519-12379) | |
| 293-422, gnl|mm7|chr13 (70550599-70550460) | |
| 293-422, gnl|Mm7|chr13 (70550462-70550592) | |
| 293-422, gnl|mm7|chr7 (17316525-17316425) | |
| 293-422, gnl|monDom2|scaffold_221 (112887-112789) | |
| 293-422, gnl|monDom2|scaffold_4 (15756414-15756554) | |
| 293-422, gnl|oryCun1|scaffold_188405 (9281-9169) | |
| 293-422, gnl|oryCun1|scaffold_7848 (7042-6938) | |
| 293-422, gnl|panTro1|chr20 (47327088-47327188) | |
| 293-422, gnl|panTro1|chr4_random (13404562-13404422) | |
| 293-422, gnl|rheMac2|chr6 (1003265-1003171) | |
| 293-422, gnl|rheMac2|chr6 (1003136-1003276) | |
| 293-422, gnl|rn3|chr1 (79017933-79017833) | |
| 293-422, gnl|rn3|chr1 (30479544-30479683) | |
| 293-422, gnl|tetNig1|chr16 (1656600-1656500) | |
| 293-422, gnl|tetNig1|chr21 (2646698-2646573) | |
| 778-1078, gnl|bosTau2|chr18 (38825357-38825055) | |
| 778-1078, gnl|canFam2|chr1 (113361834-113361452) | |
| 778-1078, gnl|dasNov1|scaffold_116825 (4910-5299) | |
| 778-1078, gnl|echTel1|scaffold_100214 (2765-2414) | |
| 778-1078, gnl|hg17|chr19 (50188138-50188522) | |
| 778-1078, gnl|Hg17|chr19 (50188137-50188438) | |
| 778-1078, gnl|loxAfr1|scaffold_35372 (29386-29744) | |
| 778-1078, gnl|mm7|chr7 (17315929-17315591) | |
| 778-1078, gnl|Mm7|chr7 (17315919-17315617) | |
| 778-1078, gnl|monDom2|scaffold_221 (111936-111616) | |
| 778-1078, gnl|oryCun1|scaffold_7848 (6589-6346) | |
| 778-1078, gnl|panTro1|chr20 (47327805-47328189) | |
| 778-1078, gnl|rn3|chr1 (79017337-79017002) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 293-422, gnl|bosTau2|chr20 (42636095-42636223) | |
| 293-422, gnl|canFam2|chr1 (113362540-113362440) | |
| 293-422, gnl|canFam2|chr34 (14282450-14282315) | |
| 293-422, gnl|danRer3|chr15 (14041262-14041358) | |
| 293-422, gnl|danRer3|chr20 (20293701-20293564) | |
| 293-422, gnl|dasNov1|scaffold_116825 (4178-4278) | |
| 293-422, gnl|dasNov1|scaffold_94582 (3514-3375) | |
| 293-422, gnl|echTel1|scaffold_218084 (1268-1382) | |
| 293-422, gnl|echTel1|scaffold_267263 (25071-25171) | |
| 293-422, gnl|fr1|chrUn (87387163-87387063) | |
| 293-422, gnl|fr1|chrUn (280368050-280367930) | |
| 293-422, gnl|hg17|chr19 (50187405-50187505) | |
| 293-422, gnl|hg17|chr5 (1373725-1373865) | |
| 293-422, gnl|Hg17|chr5 (1373864-1373730) | |
| 293-422, gnl|loxAfr1|scaffold_35372 (28675-28775) | |
| 293-422, gnl|loxAfr1|scaffold_47782 (12519-12379) | |
| 293-422, gnl|mm7|chr13 (70550599-70550460) | |
| 293-422, gnl|Mm7|chr13 (70550462-70550592) | |
| 293-422, gnl|mm7|chr7 (17316525-17316425) | |
| 293-422, gnl|monDom2|scaffold_221 (112887-112789) | |
| 293-422, gnl|monDom2|scaffold_4 (15756414-15756554) | |
| 293-422, gnl|oryCun1|scaffold_188405 (9281-9169) | |
| 293-422, gnl|oryCun1|scaffold_7848 (7042-6938) | |
| 293-422, gnl|panTro1|chr20 (47327088-47327188) | |
| 293-422, gnl|panTro1|chr4_random (13404562-13404422) | |
| 293-422, gnl|rheMac2|chr6 (1003265-1003171) | |
| 293-422, gnl|rheMac2|chr6 (1003136-1003276) | |
| 293-422, gnl|rn3|chr1 (79017933-79017833) | |
| 293-422, gnl|rn3|chr1 (30479544-30479683) | |
| 293-422, gnl|tetNig1|chr16 (1656600-1656500) | |
| 293-422, gnl|tetNig1|chr21 (2646698-2646573) | |
| 778-1078, gnl|bosTau2|chr18 (38825357-38825055) | |
| 778-1078, gnl|canFam2|chr1 (113361834-113361452) | |
| 778-1078, gnl|dasNov1|scaffold_116825 (4910-5299) | |
| 778-1078, gnl|echTel1|scaffold_100214 (2765-2414) | |
| 778-1078, gnl|hg17|chr19 (50188138-50188522) | |
| 778-1078, gnl|Hg17|chr19 (50188137-50188438) | |
| 778-1078, gnl|loxAfr1|scaffold_35372 (29386-29744) | |
| 778-1078, gnl|mm7|chr7 (17315929-17315591) | |
| 778-1078, gnl|Mm7|chr7 (17315919-17315617) | |
| 778-1078, gnl|monDom2|scaffold_221 (111936-111616) | |
| 778-1078, gnl|oryCun1|scaffold_7848 (6589-6346) | |
| 778-1078, gnl|panTro1|chr20 (47327805-47328189) | |
| 778-1078, gnl|rn3|chr1 (79017337-79017002) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| nco (0.485201) | |
| amn (0.417711) | |
| pty (0.285429) | |
| fce (0.271592) | |
| pla (0.267344) | |
| cty (0.20816) | |
| fli (0.202881) | |
| csp (0.161186) | |
| nca (0.136874) | |
| jca (0.11396) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.485201) | |
| amn (0.417711) | |
| pty (0.285429) | |
| fce (0.271592) | |
| pla (0.267344) | |
| cty (0.20816) | |
| fli (0.202881) | |
| csp (0.161186) | |
| nca (0.136874) | |
| jca (0.11396) |