Ss1.1-Pig4-TMW8034D22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTTTTTGTGGCAAAATATTTTATTGCTGCCATCCCCACGGTGGACCAC TGGGGGTCATGAGGGCTGGAGGTGGGTCTATCACAGCATCTTCTGAAATAGGGCGATGGC CTCCTCCACCTTCCTGAGCTCTGCTTCCGTCTGCTGGAGCTTAGCTTCATCTGCCTCCTG GACTTTGAGGGGCACCTTGACAGAGTAGCTGGAGGCGGCACGGCGCTCCTGCAGACGCTG GGCCTGCCGCTGCGCCTCGTCACGCTTGGCCTGCAGTTTGCCCAGCTCCCGGGCGGGGTC TACCAGCCCCTGCAGCTGCAGGTGGACGGAGCAGCGGTCAGAGGCCAGGGCCACAGCACA GCCCTGGGGTGCAGAAGCCCCCAGAGCCAGAACAGCTACTATACCAGCGCTGGCCAGCGT CTGCACGTAGCCTGACACTGCCGATGCCAGGGCACCCGTGGCCTCATCAGCCACTTCCAG GAAACAGTCGGGCCGGATCCGGGTGAGGTTGTAGTCGGCACGGAGGGAGCGCACAGCTCG AGTGATGCTCAGGGCCAGCTCGAAGGCGGCCTCTGCCTCGGGGTCCTTCCAGGAGCACTC TGAAGGCTCCGGGTAGGAGGTGACACAGAGGCTAGGAGGGGCCTGCGGCGTCCGCCGGGG CAGCCTCTGAAACAGCTCCTCGGTCACGAAGGGCATGAAAGGTGAGAGCAGCCGCAGGCC GACGTCCAAGCAGGTGTAGAGGGTCTGGCGGGCGCTCTCGGCCGCCACCTGGTCCACCCC GTTCAGCACAGGCTTCAGGCACTCCAGGTAGACGTCACAGAGCTCGTACAGCCAGAAGCT GTACTGGGCAGTGGTGACGGCCGGGAAGTCGTAGGCCTGGAAACCCTGGTTGCTGAGCCT CACGGCCTCAGTCAGCCGGCTGCGGATCCAGCGGTCCGCCAGGCTCTCGCGGCCTCCAGG CTCGGAGGTGGCGGAGGGGACGAAACCCTTCCCAAGGCCACGGAGGGCAAACTTGGTGGC GTTCCAGAGCTTGTTGCAGAAATGGCGGTACCCCAGTATCCGGTTCACATCCAGGTTGAT ATCACGGCCCTGCGAGGTGTAGGCGCACAGTCCAAAGCGGAGAGCGTCGGTGCCGCATTC GGGGATCCCCGCTGGGAAATCTGCCTTCTGCCCCTCTTTGGCCTTCTCCATCTCACTGGG ATCCAGGTTGCTGTTCACCAGCTGGTTGTGCAGGCCCTGCAGGGAGACGCCGTGGATGAC GTCCAGGGGGTCGATGACGTTGCCCAGAGACTTGCTCATCTTCCGGCCGTGGGCATCCCG CACGATGGCGTGGAGATAGACCTCTTTGAAGGGTAGCTTGCCAGTGAGCTTCAGGCCGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTTTTTGTGGCAAAATATTTTATTGCTGCCATCCCCACGGTGGACCAC TGGGGGTCATGAGGGCTGGAGGTGGGTCTATCACAGCATCTTCTGAAATAGGGCGATGGC CTCCTCCACCTTCCTGAGCTCTGCTTCCGTCTGCTGGAGCTTAGCTTCATCTGCCTCCTG GACTTTGAGGGGCACCTTGACAGAGTAGCTGGAGGCGGCACGGCGCTCCTGCAGACGCTG GGCCTGCCGCTGCGCCTCGTCACGCTTGGCCTGCAGTTTGCCCAGCTCCCGGGCGGGGTC TACCAGCCCCTGCAGCTGCAGGTGGACGGAGCAGCGGTCAGAGGCCAGGGCCACAGCACA GCCCTGGGGTGCAGAAGCCCCCAGAGCCAGAACAGCTACTATACCAGCGCTGGCCAGCGT CTGCACGTAGCCTGACACTGCCGATGCCAGGGCACCCGTGGCCTCATCAGCCACTTCCAG GAAACAGTCGGGCCGGATCCGGGTGAGGTTGTAGTCGGCACGGAGGGAGCGCACAGCTCG AGTGATGCTCAGGGCCAGCTCGAAGGCGGCCTCTGCCTCGGGGTCCTTCCAGGAGCACTC TGAAGGCTCCGGGTAGGAGGTGACACAGAGGCTAGGAGGGGCCTGCGGCGTCCGCCGGGG CAGCCTCTGAAACAGCTCCTCGGTCACGAAGGGCATGAAAGGTGAGAGCAGCCGCAGGCC GACGTCCAAGCAGGTGTAGAGGGTCTGGCGGGCGCTCTCGGCCGCCACCTGGTCCACCCC GTTCAGCACAGGCTTCAGGCACTCCAGGTAGACGTCACAGAGCTCGTACAGCCAGAAGCT GTACTGGGCAGTGGTGACGGCCGGGAAGTCGTAGGCCTGGAAACCCTGGTTGCTGAGCCT CACGGCCTCAGTCAGCCGGCTGCGGATCCAGCGGTCCGCCAGGCTCTCGCGGCCTCCAGG CTCGGAGGTGGCGGAGGGGACGAAACCCTTCCCAAGGCCACGGAGGGCAAACTTGGTGGC GTTCCAGAGCTTGTTGCAGAAATGGCGGTACCCCAGTATCCGGTTCACATCCAGGTTGAT ATCACGGCCCTGCGAGGTGTAGGCGCACAGTCCAAAGCGGAGAGCGTCGGTGCCGCATTC GGGGATCCCCGCTGGGAAATCTGCCTTCTGCCCCTCTTTGGCCTTCTCCATCTCACTGGG ATCCAGGTTGCTGTTCACCAGCTGGTTGTGCAGGCCCTGCAGGGAGACGCCGTGGATGAC GTCCAGGGGGTCGATGACGTTGCCCAGAGACTTGCTCATCTTCCGGCCGTGGGCATCCCG CACGATGGCGTGGAGATAGACCTCTTTGAAGGGTAGCTTGCCAGTGAGCTTCAGGCCGAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 279-478, + strand, RNAz p=0.867782 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 279-478, + strand, RNAz p=0.867782 |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 160-485, gnl|bosTau2|chr23 (23415869-23416194) | |
| 160-485, gnl|Hg17|chr6 (31854723-31855048) | |
| 160-485, gnl|Mm7|chr17 (33113009-33112684) | |
| 598-808, gnl|bosTau2|chr23 (23416496-23416706) | |
| 598-808, gnl|canFam2|chr12 (4260028-4260234) | |
| 598-808, gnl|danRer3|chr21 (18303815-18303607) | |
| 598-808, gnl|echTel1|scaffold_254030 (4806-4971) | |
| 598-808, gnl|fr1|chrUn (152193458-152193687) | |
| 598-808, gnl|hg17|chr6 (31855346-31855550) | |
| 598-808, gnl|Hg17|chr6 (31855364-31855574) | |
| 598-808, gnl|loxAfr1|scaffold_4520 (34549-34410) | |
| 598-808, gnl|mm7|chr17 (33112254-33112049) | |
| 598-808, gnl|Mm7|chr17 (33112233-33112023) | |
| 598-808, gnl|monDom2|scaffold_42 (17620077-17619865) | |
| 598-808, gnl|panTro1|chr5 (32258349-32258553) | |
| 598-808, gnl|rheMac2|chr4 (31426030-31426234) | |
| 598-808, gnl|rn3|chr20 (3876315-3876520) | |
| 598-808, gnl|tetNig1|chr8 (9287221-9286997) | |
| 598-808, gnl|xenTro1|scaffold_547 (429248-429435) | |
| 961-1089, gnl|bosTau2|chr23 (23417265-23417393) | |
| 961-1089, gnl|canFam2|chr12 (4260894-4261061) | |
| 961-1089, gnl|danRer3|chr21 (18299433-18299259) | |
| 961-1089, gnl|echTel1|scaffold_303864 (133147-133343) | |
| 961-1089, gnl|fr1|chrUn (204772064-204772225) | |
| 961-1089, gnl|hg17|chr6 (31856161-31856328) | |
| 961-1089, gnl|Hg17|chr6 (31856197-31856325) | |
| 961-1089, gnl|loxAfr1|scaffold_4520 (33253-33114) | |
| 961-1089, gnl|mm7|chr17 (33111481-33111322) | |
| 961-1089, gnl|Mm7|chr17 (33111451-33111323) | |
| 961-1089, gnl|monDom2|scaffold_42 (17618452-17618295) | |
| 961-1089, gnl|panTro1|chr5 (32259164-32259331) | |
| 961-1089, gnl|rheMac2|chr4 (31426840-31427025) | |
| 961-1089, gnl|rn3|chr20 (3876979-3877147) | |
| 961-1089, gnl|tetNig1|chr8 (9286530-9286375) | |
| 961-1089, gnl|xenTro1|scaffold_547 (429941-430086) | |
| 1236-1343, gnl|bosTau2|chr23 (23417884-23417991) | |
| 1236-1343, gnl|canFam2|chr12 (4261494-4261630) | |
| 1236-1343, gnl|danRer3|chr21 (18296700-18296584) | |
| 1236-1343, gnl|echTel1|scaffold_303864 (133998-134136) | |
| 1236-1343, gnl|fr1|chrUn (204772919-204773031) | |
| 1236-1343, gnl|hg17|chr6 (31856771-31856904) | |
| 1236-1343, gnl|Hg17|chr6 (31856774-31856881) | |
| 1236-1343, gnl|loxAfr1|scaffold_12481 (51945-52085) | |
| 1236-1343, gnl|mm7|chr17 (33110843-33110718) | |
| 1236-1343, gnl|Mm7|chr17 (33110838-33110731) | |
| 1236-1343, gnl|monDom2|scaffold_42 (17616590-17616430) | |
| 1236-1343, gnl|panTro1|chr5 (32259774-32259907) | |
| 1236-1343, gnl|rheMac2|chr4 (31427465-31427598) | |
| 1236-1343, gnl|rn3|chr20 (3877688-3877813) | |
| 1236-1343, gnl|tetNig1|chr8 (9285756-9285633) | |
| 1236-1343, gnl|xenTro1|scaffold_547 (431677-431808) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 160-485, gnl|bosTau2|chr23 (23415869-23416194) | |
| 160-485, gnl|Hg17|chr6 (31854723-31855048) | |
| 160-485, gnl|Mm7|chr17 (33113009-33112684) | |
| 598-808, gnl|bosTau2|chr23 (23416496-23416706) | |
| 598-808, gnl|canFam2|chr12 (4260028-4260234) | |
| 598-808, gnl|danRer3|chr21 (18303815-18303607) | |
| 598-808, gnl|echTel1|scaffold_254030 (4806-4971) | |
| 598-808, gnl|fr1|chrUn (152193458-152193687) | |
| 598-808, gnl|hg17|chr6 (31855346-31855550) | |
| 598-808, gnl|Hg17|chr6 (31855364-31855574) | |
| 598-808, gnl|loxAfr1|scaffold_4520 (34549-34410) | |
| 598-808, gnl|mm7|chr17 (33112254-33112049) | |
| 598-808, gnl|Mm7|chr17 (33112233-33112023) | |
| 598-808, gnl|monDom2|scaffold_42 (17620077-17619865) | |
| 598-808, gnl|panTro1|chr5 (32258349-32258553) | |
| 598-808, gnl|rheMac2|chr4 (31426030-31426234) | |
| 598-808, gnl|rn3|chr20 (3876315-3876520) | |
| 598-808, gnl|tetNig1|chr8 (9287221-9286997) | |
| 598-808, gnl|xenTro1|scaffold_547 (429248-429435) | |
| 961-1089, gnl|bosTau2|chr23 (23417265-23417393) | |
| 961-1089, gnl|canFam2|chr12 (4260894-4261061) | |
| 961-1089, gnl|danRer3|chr21 (18299433-18299259) | |
| 961-1089, gnl|echTel1|scaffold_303864 (133147-133343) | |
| 961-1089, gnl|fr1|chrUn (204772064-204772225) | |
| 961-1089, gnl|hg17|chr6 (31856161-31856328) | |
| 961-1089, gnl|Hg17|chr6 (31856197-31856325) | |
| 961-1089, gnl|loxAfr1|scaffold_4520 (33253-33114) | |
| 961-1089, gnl|mm7|chr17 (33111481-33111322) | |
| 961-1089, gnl|Mm7|chr17 (33111451-33111323) | |
| 961-1089, gnl|monDom2|scaffold_42 (17618452-17618295) | |
| 961-1089, gnl|panTro1|chr5 (32259164-32259331) | |
| 961-1089, gnl|rheMac2|chr4 (31426840-31427025) | |
| 961-1089, gnl|rn3|chr20 (3876979-3877147) | |
| 961-1089, gnl|tetNig1|chr8 (9286530-9286375) | |
| 961-1089, gnl|xenTro1|scaffold_547 (429941-430086) | |
| 1236-1343, gnl|bosTau2|chr23 (23417884-23417991) | |
| 1236-1343, gnl|canFam2|chr12 (4261494-4261630) | |
| 1236-1343, gnl|danRer3|chr21 (18296700-18296584) | |
| 1236-1343, gnl|echTel1|scaffold_303864 (133998-134136) | |
| 1236-1343, gnl|fr1|chrUn (204772919-204773031) | |
| 1236-1343, gnl|hg17|chr6 (31856771-31856904) | |
| 1236-1343, gnl|Hg17|chr6 (31856774-31856881) | |
| 1236-1343, gnl|loxAfr1|scaffold_12481 (51945-52085) | |
| 1236-1343, gnl|mm7|chr17 (33110843-33110718) | |
| 1236-1343, gnl|Mm7|chr17 (33110838-33110731) | |
| 1236-1343, gnl|monDom2|scaffold_42 (17616590-17616430) | |
| 1236-1343, gnl|panTro1|chr5 (32259774-32259907) | |
| 1236-1343, gnl|rheMac2|chr4 (31427465-31427598) | |
| 1236-1343, gnl|rn3|chr20 (3877688-3877813) | |
| 1236-1343, gnl|tetNig1|chr8 (9285756-9285633) | |
| 1236-1343, gnl|xenTro1|scaffold_547 (431677-431808) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| nje (0.33184) | |
| cga (0.279096) | |
| fbs (0.175346) | |
| cag (0.151194) | |
| pty (0.142714) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| cly (0.120642) | |
| med (0.116252) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.33184) | |
| cga (0.279096) | |
| fbs (0.175346) | |
| cag (0.151194) | |
| pty (0.142714) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| cly (0.120642) | |
| med (0.116252) |