Non-Coding RNA Search

Ss1.1-Pig4-TMW8034E03.3

Sequence:


               
               CCGGCCTGGACCCCATCCTGGCGTGTTTGCCAACAATGACCCCTTCTCGGCCCCGCCTCA
GATCCCATCTCGACCAGCTCGGATTCCACCCGGCATACCCCCCGGAGTCCCCAGCAGAAG
ACCCCCTGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGAGCCATCCCTGCTCGA
CTAGGCTGCGGGGGGCACCTTCTCTGGGGTCCTCGAGCACCCTCGGTGCAGGAGCTTCAT
TGGTCTGGGCCCATCTGCCGCCCTTAGTCCTCCAGTCCCCATGCGGGACCAGGCTCTCTG
TGGGCAGCCCCTGACTCTTCCCTAACCCCGGCCCCCAGGCAGGGGCTGGCCTGGCCCCCA
TCTCCAGCTGGACACAGCACTGAATGGAGGGGCCCTGGCAGCCCAGGATGAGGGCAGCCG
GGGTGTTGCACTTTGGGGGATGGGGTCTCAGGTAGCAGAGCAGGCAGCTGCCGCCTGAGC
ACCATCTTGAATGAGGGAGCCAGGCTGAGGTGCCTCACCCAGGGGCTTCTCTGGCCAGGA
AAGCCTGAGCAGACCAGGCCTTCTAGAAACAGCACCAAGGGAGTCTGCACCCCTAGTCCT
TGCTGGGGCACAAGGAGTGTCTGCTTCTTGGCAGTGAGACCTCCCAGTGGAGAGCCAGGC
CCAGTGGGCCCAGCGGGCCCAGCGCTACCCGCCCACCCAAGTTGTACATATTCCTTCCTT
GGCCGTATTAACCGCACGGCCCAGCCTCGGCTGCCAGAGGTGCCTTTGCCAGGTCCGGAA
AACCCTCGGCCCCGGCCAACCCCGCTCTCTCTTACCCGGGGCCTCCAGGGCAGCCTGGGC
TGAGGGCTAAGGGGTGGAGAAGCCTCCTCCACCGGGTGAGCCCCGGGCAGCCTGTCTGAG
CAGACCTTCTCGCTCGTTCGCTCGCTCGCTCGCTCGGTTTGACCACTGTAAGTGCCTGCA
CTCTGTATCCTATTAATAAACTAAAATAAAGGGAAGAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGCCTGGACCCCATCCTGGCGTGTTTGCCAACAATGACCCCTTCTCGGCCCCGCCTCA
GATCCCATCTCGACCAGCTCGGATTCCACCCGGCATACCCCCCGGAGTCCCCAGCAGAAG
ACCCCCTGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGAGCCATCCCTGCTCGA
CTAGGCTGCGGGGGGCACCTTCTCTGGGGTCCTCGAGCACCCTCGGTGCAGGAGCTTCAT
TGGTCTGGGCCCATCTGCCGCCCTTAGTCCTCCAGTCCCCATGCGGGACCAGGCTCTCTG
TGGGCAGCCCCTGACTCTTCCCTAACCCCGGCCCCCAGGCAGGGGCTGGCCTGGCCCCCA
TCTCCAGCTGGACACAGCACTGAATGGAGGGGCCCTGGCAGCCCAGGATGAGGGCAGCCG
GGGTGTTGCACTTTGGGGGATGGGGTCTCAGGTAGCAGAGCAGGCAGCTGCCGCCTGAGC
ACCATCTTGAATGAGGGAGCCAGGCTGAGGTGCCTCACCCAGGGGCTTCTCTGGCCAGGA
AAGCCTGAGCAGACCAGGCCTTCTAGAAACAGCACCAAGGGAGTCTGCACCCCTAGTCCT
TGCTGGGGCACAAGGAGTGTCTGCTTCTTGGCAGTGAGACCTCCCAGTGGAGAGCCAGGC
CCAGTGGGCCCAGCGGGCCCAGCGCTACCCGCCCACCCAAGTTGTACATATTCCTTCCTT
GGCCGTATTAACCGCACGGCCCAGCCTCGGCTGCCAGAGGTGCCTTTGCCAGGTCCGGAA
AACCCTCGGCCCCGGCCAACCCCGCTCTCTCTTACCCGGGGCCTCCAGGGCAGCCTGGGC
TGAGGGCTAAGGGGTGGAGAAGCCTCCTCCACCGGGTGAGCCCCGGGCAGCCTGTCTGAG
CAGACCTTCTCGCTCGTTCGCTCGCTCGCTCGCTCGGTTTGACCACTGTAAGTGCCTGCA
CTCTGTATCCTATTAATAAACTAAAATAAAGGGAAGAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               112-219, - strand, RNAz p=0.615566
               

               
               258-679, - strand, RNAz p=0.863843
               

               
               709-807, - strand, RNAz p=0.843981

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               112-219, - strand, RNAz p=0.615566
               

               
               258-679, - strand, RNAz p=0.863843
               

               
               709-807, - strand, RNAz p=0.843981

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               112-807, gnl|bosTau2|chr7 (9931890-9932557)
               

               
               112-807, gnl|Hg17|chr19 (10802651-10803341)
               

               
               112-807, gnl|Mm7|chr9 (21385679-21386288)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               112-807, gnl|bosTau2|chr7 (9931890-9932557)
               

               
               112-807, gnl|Hg17|chr19 (10802651-10803341)
               

               
               112-807, gnl|Mm7|chr9 (21385679-21386288)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	112-219, - strand, RNAz p=0.615566
	258-679, - strand, RNAz p=0.863843
	709-807, - strand, RNAz p=0.843981

	112-807, gnl\|bosTau2\|chr7 (9931890-9932557)
	112-807, gnl\|Hg17\|chr19 (10802651-10803341)
	112-807, gnl\|Mm7\|chr9 (21385679-21386288)

	duo (0.172801)
	mcp (0.170648)
	csp (0.161186)
	cli (0.152812)
	hyp (0.142837)
	nca (0.136874)
	nmm (0.132802)
	eep (0.122564)
	ebs (0.118301)
	ecc (0.115035)