Non-Coding RNA Search

Ss1.1-Pig4-TMW8034E07.5

Sequence:


               
               CAGCCCCCGCGTGGTGCGTGCTTGTGTCTTGGCCCCTTGCTCACAAACTGGAGGCGGGCG
CCCGCGTCTCTTCCTCTGCTGCGTTTGTACATGAGAACGCGTATCTTCAGCAGTATTGCA
CCCCCTCCTCCTGTCTCTCCGAGGCGGTAGGCAGAGGGCTGGCATCCCCCAGGGCCTTTC
TCAGGCACCGAAAGAGGCCCCAGACCCAGGGTGTCCCTGGCCGAGGGCAGGTGCGAAGGC
TGGTCGTCACGACCCCCTGCACGTGTCCTCTGCGCTGGAAGCCATTCTTTCGAACCGGCC
GGACGCACGGACGGGCCACCCTTGCCTGATGAGCTTGACGAGCGGCCCTTGATCTCCGAG
TCCAAGGACGGAGAGACCAGCGGCCTCCGTCCGCCCCCGCCCCAGCCCCCGCCAGCCTCT
GGCTGCACGGCCAGGTCCTGCCTCATGGCAGGCCTCCCAGAGCCTGGCCGAGGGCCATGC
CGCCTTGGGCTCCCCGACGGGCTGGACGTAACTTACATCTTCTGGCCCCTTCGGGAGCCC
GGGTATCATAAAGGAATGACTTGGTCACTGCATCCCGTATGGGTTATGGTTCTGAGAAAA
GCAAATACCATTTTTGGCTGCATTAAAAGAAGCATCATGTATAAAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCCCCCGCGTGGTGCGTGCTTGTGTCTTGGCCCCTTGCTCACAAACTGGAGGCGGGCG
CCCGCGTCTCTTCCTCTGCTGCGTTTGTACATGAGAACGCGTATCTTCAGCAGTATTGCA
CCCCCTCCTCCTGTCTCTCCGAGGCGGTAGGCAGAGGGCTGGCATCCCCCAGGGCCTTTC
TCAGGCACCGAAAGAGGCCCCAGACCCAGGGTGTCCCTGGCCGAGGGCAGGTGCGAAGGC
TGGTCGTCACGACCCCCTGCACGTGTCCTCTGCGCTGGAAGCCATTCTTTCGAACCGGCC
GGACGCACGGACGGGCCACCCTTGCCTGATGAGCTTGACGAGCGGCCCTTGATCTCCGAG
TCCAAGGACGGAGAGACCAGCGGCCTCCGTCCGCCCCCGCCCCAGCCCCCGCCAGCCTCT
GGCTGCACGGCCAGGTCCTGCCTCATGGCAGGCCTCCCAGAGCCTGGCCGAGGGCCATGC
CGCCTTGGGCTCCCCGACGGGCTGGACGTAACTTACATCTTCTGGCCCCTTCGGGAGCCC
GGGTATCATAAAGGAATGACTTGGTCACTGCATCCCGTATGGGTTATGGTTCTGAGAAAA
GCAAATACCATTTTTGGCTGCATTAAAAGAAGCATCATGTATAAAATC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               415-573, - strand, RNAz p=0.997643

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               415-573, - strand, RNAz p=0.997643

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               437-544, - strand, RNAmicro p=0.961316
               

               
               513-577, + strand, RNAmicro p=0.950125
               

               
               437-504, + strand, RNAmicro p=0.924083

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               437-544, - strand, RNAmicro p=0.961316
               

               
               513-577, + strand, RNAmicro p=0.950125
               

               
               437-504, + strand, RNAmicro p=0.924083

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-648, gnl|bosTau2|chr3 (78581707-78582340)
               

               
               7-648, gnl|Hg17|chr2 (233569563-233568918)
               

               
               7-648, gnl|Mm7|chr1 (87378307-87377738)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-648, gnl|bosTau2|chr3 (78581707-78582340)
               

               
               7-648, gnl|Hg17|chr2 (233569563-233568918)
               

               
               7-648, gnl|Mm7|chr1 (87378307-87377738)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fcc (0.39557)
               

               
               nje (0.33184)
               

               
               fhi (0.169578)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               nje (0.33184)
               

               
               fhi (0.169578)

	437-544, - strand, RNAmicro p=0.961316
	513-577, + strand, RNAmicro p=0.950125
	437-504, + strand, RNAmicro p=0.924083

	7-648, gnl\|bosTau2\|chr3 (78581707-78582340)
	7-648, gnl\|Hg17\|chr2 (233569563-233568918)
	7-648, gnl\|Mm7\|chr1 (87378307-87377738)