Non-Coding RNA Search

Ss1.1-Pig4-TMW8034E12.3

Sequence:


               
               TTTATTATATCTCTCTCTCTACCTAGTGTGTGTGTGGTTGTGTGTGGCAGTGTGTGAGGT
GCAGGAGTGCGGCCCGTCAGGGCCCTGGTGGTCTTTCTTCTCTGTGGCTGGGCTCCAGCC
CCTAGGAGCTGGCTGTCCATCCATCCATCCGTCTGCGTGTCTCTGTGAGTACCTCTCGGG
GCTGTCAGGAGCCCTAGAGCACGCCCCTTCCCTGTGCTCCCTCTCCTCTGCGCCGGAGCC
CGGCGGGGGGCCCACTTCTGGGACCTGGGTGTTCAGCAGAGTGGAAAGCAGAGGGTCTCC
TTTTCTTTCTCCCTCTTGTTCCCCTTAAGCCCCAAGCAGGAAATGCCGAAAGCTCTTAAG
CTGTTACCTGTAGGTGTGCGGAGGGTGTTGGCGATTGGGTTGTAGGACCCTCCTAACTCT
GGCCCTTGCCACTGACCCAAAGACAGCTGGTGGCTTCTTTTGCCTGGAGACAATCCTTTG
TTTGCCTGGCTGGCTGGGTCGACACCTGCTCTGCTGATTCTGCCGAGTGGGCTCTCGCCC
TCCTGCCCCAGGGCCGCCTCCTGCTTGGACTCTGACTCTGATTCTTGTTGGGCCTCGGGA
CCCTGATGACCGGGGCTGGGGTCCACCTGCTCAGGGTCATGCTCACCAGCACCTCCTGTT
GGGGGCGGGGGGCGGGTGTTCCTCTGAGCCAGGCCAGAACTAGAACCCCTCCTTCCCCGC
TGCACCCCGTCATATTGCCCCAGCATGGCTGCTACGGGCGCACAGCAGTGAAGGGCCTGA
GCCCCAAATTTGTAAGCCCCTAATTGAGGCACAGGGAGGGCAGGTAGGAGGACTCTCCCA
GGCCCAGCTCAGAGTATTAAGCCCTGTGGAAAAATCATTGCCTGGGGTGAAGGTGGCATT
GCCCAGGCCAGAAGTGGCAACACGGGCCCCAAACCAGCCTAGTCTGAGCTGTGGACTAAG
GCCCTCGTTTGGGCGGACTGCCGGGCAGAGATGTGCTCTTTCTCTCGCCTGGGCAGACAC
CTAGCTGGCCGGGTCCTTCCTCAGCCTCACCTCCCTTCTGTCTCAATCCTGCTTCTGGAC
TGCTGGTCTCCTCCTACCCTCTTCTAACTATTTCTAGTTACCACTGACTTGTGGCCATGG
ACCGACCAGACCAGCACACAAAATAAAAGTTTGTTCCAAGTTGACGGTGTCGTGTTCCCT
GCCCAGCCCTCCAGGTGGAGGTGCTGCCACGGGGAACCCCGTTGCTCTGCCTGCCCTCGA
GCCCCCGCTGCAGGGTCGGGCCGAGAGGAGCCCGGCTTCTCCTGTCAGGCGGGCCTGGCT
TCAAAACCCAAGTTCCTTCACCAGCAGTGACAAAGGACAAGTTGCCAAGCTCTGAACCTC
AGTTTCCTCATCCACAGCAAGAGGTACATAAATGCTTGTCTCTGTTGTCGTGAGGATGCA
GTGGGAGGGCGTGTGTGCCCGGCATGTGGGAGGAACCTGGTGAATGGGGGCCACACTGCT
CCCCAGCCCCCTGGCTCCTAAGGCCATGGCAGGGGCCGCAAGCTGGGGGACAGGCTCAAA
AGGAGGAATGTGGCATCGACATGTCTCTGCCATGTGGCTGGGCTGTGCCAGGCATTTCCC
TCGTTTGATGTTCTTTGATGTTCACAGCTCCCATCTGTGAGGGAGGTGGCAGTAGTTATG
TTTTTCTGGTTAAGGAGACTGAAGCTTAGAGGAGCAGTGCCACCAGCCCCCAGCCGTTCC
CAGTCACCTGCTCCAGCATGACCCCCAGCTTTTCCTGGTTCCTTTGTCGACTGGCTGTTT
CCCTCTTGCTTTTTGACTGGTTCTGCTTACAGGGGCCGCTGCCCACTGGTGCCTTCGTAA
TAGGAGTTCTGGCAGCACCCCCTGCTCTCTGTCCCCGTGGTGGGTGCTGTGGAATGTGTG
CTTCCACAGACCTGGGCCATGCGGGACCTCGGAACAGGCAGAACCGCATCTTGTTGGAAC
TCTCTTGCCCTCGTGAGCATAACCACTTTACATTCGGAGGCTGGGGCCTCCACTCTGGCC
TCTGCCTTCAGACACTCAGGAGGTCGGTCTGGATCTCTGTGGTCACCAGGCCCACGCCTA
CTAGCCAGGGGGCAGACTACAGCATTTTACTGTTAGCAGGGACTACAAAGGCCTCATGTG
GGTGCCTCAGCCCTACCAAGTCTTTGGAATAAAACACCAGCCCTTTTGTAGTTGATGAAG
AATAAAGTTGTTAATCCAATCATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTATTATATCTCTCTCTCTACCTAGTGTGTGTGTGGTTGTGTGTGGCAGTGTGTGAGGT
GCAGGAGTGCGGCCCGTCAGGGCCCTGGTGGTCTTTCTTCTCTGTGGCTGGGCTCCAGCC
CCTAGGAGCTGGCTGTCCATCCATCCATCCGTCTGCGTGTCTCTGTGAGTACCTCTCGGG
GCTGTCAGGAGCCCTAGAGCACGCCCCTTCCCTGTGCTCCCTCTCCTCTGCGCCGGAGCC
CGGCGGGGGGCCCACTTCTGGGACCTGGGTGTTCAGCAGAGTGGAAAGCAGAGGGTCTCC
TTTTCTTTCTCCCTCTTGTTCCCCTTAAGCCCCAAGCAGGAAATGCCGAAAGCTCTTAAG
CTGTTACCTGTAGGTGTGCGGAGGGTGTTGGCGATTGGGTTGTAGGACCCTCCTAACTCT
GGCCCTTGCCACTGACCCAAAGACAGCTGGTGGCTTCTTTTGCCTGGAGACAATCCTTTG
TTTGCCTGGCTGGCTGGGTCGACACCTGCTCTGCTGATTCTGCCGAGTGGGCTCTCGCCC
TCCTGCCCCAGGGCCGCCTCCTGCTTGGACTCTGACTCTGATTCTTGTTGGGCCTCGGGA
CCCTGATGACCGGGGCTGGGGTCCACCTGCTCAGGGTCATGCTCACCAGCACCTCCTGTT
GGGGGCGGGGGGCGGGTGTTCCTCTGAGCCAGGCCAGAACTAGAACCCCTCCTTCCCCGC
TGCACCCCGTCATATTGCCCCAGCATGGCTGCTACGGGCGCACAGCAGTGAAGGGCCTGA
GCCCCAAATTTGTAAGCCCCTAATTGAGGCACAGGGAGGGCAGGTAGGAGGACTCTCCCA
GGCCCAGCTCAGAGTATTAAGCCCTGTGGAAAAATCATTGCCTGGGGTGAAGGTGGCATT
GCCCAGGCCAGAAGTGGCAACACGGGCCCCAAACCAGCCTAGTCTGAGCTGTGGACTAAG
GCCCTCGTTTGGGCGGACTGCCGGGCAGAGATGTGCTCTTTCTCTCGCCTGGGCAGACAC
CTAGCTGGCCGGGTCCTTCCTCAGCCTCACCTCCCTTCTGTCTCAATCCTGCTTCTGGAC
TGCTGGTCTCCTCCTACCCTCTTCTAACTATTTCTAGTTACCACTGACTTGTGGCCATGG
ACCGACCAGACCAGCACACAAAATAAAAGTTTGTTCCAAGTTGACGGTGTCGTGTTCCCT
GCCCAGCCCTCCAGGTGGAGGTGCTGCCACGGGGAACCCCGTTGCTCTGCCTGCCCTCGA
GCCCCCGCTGCAGGGTCGGGCCGAGAGGAGCCCGGCTTCTCCTGTCAGGCGGGCCTGGCT
TCAAAACCCAAGTTCCTTCACCAGCAGTGACAAAGGACAAGTTGCCAAGCTCTGAACCTC
AGTTTCCTCATCCACAGCAAGAGGTACATAAATGCTTGTCTCTGTTGTCGTGAGGATGCA
GTGGGAGGGCGTGTGTGCCCGGCATGTGGGAGGAACCTGGTGAATGGGGGCCACACTGCT
CCCCAGCCCCCTGGCTCCTAAGGCCATGGCAGGGGCCGCAAGCTGGGGGACAGGCTCAAA
AGGAGGAATGTGGCATCGACATGTCTCTGCCATGTGGCTGGGCTGTGCCAGGCATTTCCC
TCGTTTGATGTTCTTTGATGTTCACAGCTCCCATCTGTGAGGGAGGTGGCAGTAGTTATG
TTTTTCTGGTTAAGGAGACTGAAGCTTAGAGGAGCAGTGCCACCAGCCCCCAGCCGTTCC
CAGTCACCTGCTCCAGCATGACCCCCAGCTTTTCCTGGTTCCTTTGTCGACTGGCTGTTT
CCCTCTTGCTTTTTGACTGGTTCTGCTTACAGGGGCCGCTGCCCACTGGTGCCTTCGTAA
TAGGAGTTCTGGCAGCACCCCCTGCTCTCTGTCCCCGTGGTGGGTGCTGTGGAATGTGTG
CTTCCACAGACCTGGGCCATGCGGGACCTCGGAACAGGCAGAACCGCATCTTGTTGGAAC
TCTCTTGCCCTCGTGAGCATAACCACTTTACATTCGGAGGCTGGGGCCTCCACTCTGGCC
TCTGCCTTCAGACACTCAGGAGGTCGGTCTGGATCTCTGTGGTCACCAGGCCCACGCCTA
CTAGCCAGGGGGCAGACTACAGCATTTTACTGTTAGCAGGGACTACAAAGGCCTCATGTG
GGTGCCTCAGCCCTACCAAGTCTTTGGAATAAAACACCAGCCCTTTTGTAGTTGATGAAG
AATAAAGTTGTTAATCCAATCATC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               691-1286, - strand, RNAz p=0.999964
               

               
               1955-2055, - strand, RNAz p=0.881144

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               691-1286, - strand, RNAz p=0.999964
               

               
               1955-2055, - strand, RNAz p=0.881144

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               944-1064, + strand, RNAmicro p=0.982565

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               944-1064, + strand, RNAmicro p=0.982565

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               246-2244, gnl|bosTau2|chr5 (69313494-69311490)
               

               
               246-2244, gnl|Hg17|chr22 (37451782-37454087)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               246-2244, gnl|bosTau2|chr5 (69313494-69311490)
               

               
               246-2244, gnl|Hg17|chr22 (37451782-37454087)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               csp (0.322373)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.322373)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)

	691-1286, - strand, RNAz p=0.999964
	1955-2055, - strand, RNAz p=0.881144

	246-2244, gnl\|bosTau2\|chr5 (69313494-69311490)
	246-2244, gnl\|Hg17\|chr22 (37451782-37454087)

	csp (0.322373)
	nms (0.213858)
	fcc (0.197785)
	nlu (0.191681)
	ill (0.175593)
	fhi (0.169578)
	eli (0.151814)
	pla (0.133672)
	ute (0.132784)
	eep (0.122564)
	cly (0.120642)
	pgl (0.118483)
	jca (0.11396)