Non-Coding RNA Search

Ss1.1-Pig4-TMW8034E13.3

Sequence:


               
               AGCCTGGATCCCGGCAGGTCTTACCGCTACTGGCGCTGGAAGGTGATCCGGAAACATGGG
CTGGCCTCAGGGTTTGTTCCGCGTCTTGTGGCGAGCACTGTCGAAGGAAGTGAAGGAGCA
AGTGGGCACAGACCGGTTCGGGAACAAATACTACTATATCCCGGAGCACAAGAACTGGAG
AGGACAAACTGTTCGAGAGAAAAGAATTGTAGAAGCATCAAATAAAAGAGAAATAGACTA
TGAAGTAGGGGATATCCCAGCAGAATGGGAAGCTTGGATCAGAAGAACGAGAAAAACTCC
ACCTACTATGGAGGAAATACTAAAGAATGAAAAATATAGAGAAGAAATGCAAACAAAAAG
CAAAGATTTTTACAAAAAAGAAAAACTCATTAGTGAAGAGAGCCACAAGGAACTCTTAGC
TTCACCAGTTCAAACACAGATTAAAGGACATGCCTCTGCTCCATACTTTGGAAAGGAAGA
ACCCTCAGTGGCTCCCACCAGCACTGGTAAAACCTTTCAACCAGGATCCTGGATGCCACA
AGACAGCAAGCACCGCAATCAGTGAATGCACTGTGGTAAAATCATTTCATTTATATGTAT
GTAACTATTTCAACAAATAAAAGTAAAAAAGTTATTTTGTATTTTCCATCATCTTTCTTA
GCGTTAATCTTTTTTTCCCCGTGACTTTGGCATTGGCCCCATGCGTCACCTTCCTTATGG
AGAAACCTAACTCCTTTTAAACTTAAATCCTTCACTTGACTTAGTCCTCATTCTGTTTCC
CTCTTGGATTGCTTTACTGCGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCTGGATCCCGGCAGGTCTTACCGCTACTGGCGCTGGAAGGTGATCCGGAAACATGGG
CTGGCCTCAGGGTTTGTTCCGCGTCTTGTGGCGAGCACTGTCGAAGGAAGTGAAGGAGCA
AGTGGGCACAGACCGGTTCGGGAACAAATACTACTATATCCCGGAGCACAAGAACTGGAG
AGGACAAACTGTTCGAGAGAAAAGAATTGTAGAAGCATCAAATAAAAGAGAAATAGACTA
TGAAGTAGGGGATATCCCAGCAGAATGGGAAGCTTGGATCAGAAGAACGAGAAAAACTCC
ACCTACTATGGAGGAAATACTAAAGAATGAAAAATATAGAGAAGAAATGCAAACAAAAAG
CAAAGATTTTTACAAAAAAGAAAAACTCATTAGTGAAGAGAGCCACAAGGAACTCTTAGC
TTCACCAGTTCAAACACAGATTAAAGGACATGCCTCTGCTCCATACTTTGGAAAGGAAGA
ACCCTCAGTGGCTCCCACCAGCACTGGTAAAACCTTTCAACCAGGATCCTGGATGCCACA
AGACAGCAAGCACCGCAATCAGTGAATGCACTGTGGTAAAATCATTTCATTTATATGTAT
GTAACTATTTCAACAAATAAAAGTAAAAAAGTTATTTTGTATTTTCCATCATCTTTCTTA
GCGTTAATCTTTTTTTCCCCGTGACTTTGGCATTGGCCCCATGCGTCACCTTCCTTATGG
AGAAACCTAACTCCTTTTAAACTTAAATCCTTCACTTGACTTAGTCCTCATTCTGTTTCC
CTCTTGGATTGCTTTACTGCGAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|29789409|ref|NP_777549.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|29789409|ref|NP_777549.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               458-647, - strand, RNAz p=0.942833

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               458-647, - strand, RNAz p=0.942833

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               63-647, gnl|bosTau2|chr24 (20823523-20824099)
               

               
               63-647, gnl|Hg17|chr2 (20651357-20650785)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               63-647, gnl|bosTau2|chr24 (20823523-20824099)
               

               
               63-647, gnl|Hg17|chr2 (20651357-20650785)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               tes (0.207814)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               nje (0.16592)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               nje (0.16592)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	63-647, gnl\|bosTau2\|chr24 (20823523-20824099)
	63-647, gnl\|Hg17\|chr2 (20651357-20650785)

	tes (0.207814)
	sto (0.179824)
	gul (0.177588)
	nje (0.16592)
	hyp (0.142837)
	csk (0.140746)
	lyg (0.133103)
	ova (0.129132)
	spc (0.113366)
	ldo (0.0970026)