Non-Coding RNA Search

Ss1.1-Pig4-TMW8034E21.5

Sequence:


               
               GGACCTCCTCAGCACCCCCTCCCACACTGGGACGAGCGGGGCTGCATCAAACAATGGTGG
TCATACACCATGGAAGCTGTACCCACCTTCCCAGGATGCCAGAGGACAGGATAGAGGCCT
CAGTCAGGATACAGACAGCATCTGGTGTCATGACACCTGCGTACTTATGACCCCACCCCC
AGGCCTCACACCTGACCTGTAGCCACAGCACTGAGCCAGGAGGAGGGGGTGAGATTCAAC
ATGATTGTGAGGGGTGTCGAAGTCTGACCTGACCAGAAGGTGTGTGATGGAATCCTTGAC
CTCCAACATGGAAACACACAACTGGGAAACATTGAAACTCACCCACCGCTGCATGTGCTG
AGGTCCTGCAGTCCTAAGAGACAAGTGGCCCTGCACAGACACGTGCAGTATTGAAACACA
AGTCTCAACACTTTCTCCGACAGATGCCCGGTTCCGGCACTGCTGTCTGCTGACTATCCC
CAGCTCCTGATGATGACATATTTATTCATTTGTTCTTCTACCAGCTATTTATTGAGTTCC
TTTTACATGGGCTGGAGTGGTAAACAAGGATTTGCTTCTCAGTCTAATCTCATTCAGGGT
TGCCAGGTACAGTTGTAGTGGCTGTGCACTGCACAAGAGTGCCTGAAGGAAGTTCTTGTG
TGGTGCAGTGGGTGAAGGATTTGGCATTGCCACAGTTGTGTCACAGGTTGCAGCTGTGGC
TTAGGTTCGATCCCTGGCCTAGGAATTTCCATATGCTGTGAGTGGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACCTCCTCAGCACCCCCTCCCACACTGGGACGAGCGGGGCTGCATCAAACAATGGTGG
TCATACACCATGGAAGCTGTACCCACCTTCCCAGGATGCCAGAGGACAGGATAGAGGCCT
CAGTCAGGATACAGACAGCATCTGGTGTCATGACACCTGCGTACTTATGACCCCACCCCC
AGGCCTCACACCTGACCTGTAGCCACAGCACTGAGCCAGGAGGAGGGGGTGAGATTCAAC
ATGATTGTGAGGGGTGTCGAAGTCTGACCTGACCAGAAGGTGTGTGATGGAATCCTTGAC
CTCCAACATGGAAACACACAACTGGGAAACATTGAAACTCACCCACCGCTGCATGTGCTG
AGGTCCTGCAGTCCTAAGAGACAAGTGGCCCTGCACAGACACGTGCAGTATTGAAACACA
AGTCTCAACACTTTCTCCGACAGATGCCCGGTTCCGGCACTGCTGTCTGCTGACTATCCC
CAGCTCCTGATGATGACATATTTATTCATTTGTTCTTCTACCAGCTATTTATTGAGTTCC
TTTTACATGGGCTGGAGTGGTAAACAAGGATTTGCTTCTCAGTCTAATCTCATTCAGGGT
TGCCAGGTACAGTTGTAGTGGCTGTGCACTGCACAAGAGTGCCTGAAGGAAGTTCTTGTG
TGGTGCAGTGGGTGAAGGATTTGGCATTGCCACAGTTGTGTCACAGGTTGCAGCTGTGGC
TTAGGTTCGATCCCTGGCCTAGGAATTTCCATATGCTGTGAGTGGCAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               314-433, - strand, RNAz p=0.56048

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               314-433, - strand, RNAz p=0.56048

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               1-645, gnl|bosTau2|chr7 (9523305-9522655)
               

               
               1-645, gnl|canFam2|chr20 (53823062-53822510)
               

               
               1-645, gnl|dasNov1|scaffold_236445 (4069-3628)
               

               
               1-645, gnl|echTel1|scaffold_104634 (2068-2514)
               

               
               1-645, gnl|hg17|chr19 (10256946-10257515)
               

               
               1-645, gnl|Hg17|chr19 (10256979-10257618)
               

               
               1-645, gnl|mm7|chr9 (20904487-20904935)
               

               
               1-645, gnl|panTro1|chr20 (10642614-10643184)
               

               
               1-645, gnl|rheMac2|chr19 (10098211-10098779)
               

               
               1-645, gnl|rn3|chr8 (20050988-20051422)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-645, gnl|bosTau2|chr7 (9523305-9522655)
               

               
               1-645, gnl|canFam2|chr20 (53823062-53822510)
               

               
               1-645, gnl|dasNov1|scaffold_236445 (4069-3628)
               

               
               1-645, gnl|echTel1|scaffold_104634 (2068-2514)
               

               
               1-645, gnl|hg17|chr19 (10256946-10257515)
               

               
               1-645, gnl|Hg17|chr19 (10256979-10257618)
               

               
               1-645, gnl|mm7|chr9 (20904487-20904935)
               

               
               1-645, gnl|panTro1|chr20 (10642614-10643184)
               

               
               1-645, gnl|rheMac2|chr19 (10098211-10098779)
               

               
               1-645, gnl|rn3|chr8 (20050988-20051422)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               jca (0.22792)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               cly (0.120642)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.22792)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               cly (0.120642)

	1-645, gnl\|bosTau2\|chr7 (9523305-9522655)
	1-645, gnl\|canFam2\|chr20 (53823062-53822510)
	1-645, gnl\|dasNov1\|scaffold_236445 (4069-3628)
	1-645, gnl\|echTel1\|scaffold_104634 (2068-2514)
	1-645, gnl\|hg17\|chr19 (10256946-10257515)
	1-645, gnl\|Hg17\|chr19 (10256979-10257618)
	1-645, gnl\|mm7\|chr9 (20904487-20904935)
	1-645, gnl\|panTro1\|chr20 (10642614-10643184)
	1-645, gnl\|rheMac2\|chr19 (10098211-10098779)
	1-645, gnl\|rn3\|chr8 (20050988-20051422)