Ss1.1-Pig4-TMW8034E23.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCCAGGCCAAGAGCTGGCGTCGAGCGGCTGGAACCGTCCCCTAGTGCAGGAACCTGCG GTGTGAGGTGCGGCGGTGTGAGCGGCGGCACAGAGCATGTGCGGGCGGACGTCCTGCCAC CTGCCCTTGGAGGCCCTCACCCGGGCCTGCGCCTACCGGGACCGGCAGGGCCGCCAGCAG CTCCCGGAATGGAGGGACCCTGACCGGTACTACCCCTCGTACAACAAGAGCCCGCGGTCC AGCACGCCGGTGCTCCTGTCGCGGCGGCACCTGGAGAAGGGTGCAGACTCATCTGAGCGG ATCATTGCTCCCATGCGATGGGGCTTAGTCCCATCCTGGTTTAAAGAAGCTGATCCTTCC AAGCTGCAATTCAATACAACCAACTGCCGTAGTGATACCATAATGGAGAAACGGTCCTTC AAGGTGCCTCTGAGTAAGGGAAGGCGCTGTGTTGTTTTAGCAGATGGATTCTACGAGTGG CAGCGACATCCGGGAACATACCAGAAGCAGCCATACTTCATCTACTTCCCCCAAATCAAA ACAGAAAAGTCAGGCAGCATGGGCGCTGCAGACAATCCTGAGGACTGGGAGAAAGTCTGG GACAATTGGAGGCTGCTGACAATGGCTGGCATCTTTGACTGCTGGGACCCTCCAGAGGGA GGAGACTGCCTATATTCTTACACCATCATCACAGTAGAGTCCTGCCAAGGCTTGAATGAC ATCCACCACAGGATGCCTGCCATATTAGATGGAGAGGAGGCAGTCTCCAAATGGCTGGAC TTTGGCGAGGTCTCAGCCCAGGAAGCTCTGAAGTTAATCCATCCCACAGAGAACATCGCC TTCCATCCAGTCTCTACCGTGGTGAACAACTTCCGAAACGATACTCCTGAGTGTCTGCTT CCTGCCGACTTACTCGTCAAAAAGGAGTTCAAGCCAAGTGGCAGTAGCCAGAAGATGTTG CAGTGGCTGGCCACAAAGTCACCAAAAAAAGAAGACCCCAAAACACCAAAAAAGGCAGAG TCAGATGTGCCCCAGTGGTCCAGCCAGTTCCTACAGAAGAGCCCAGGCCCCCTCAAAAGA AGCAGTGCAGGACTCCTGGAGCGATGGCTGAAGCAAGAGAAGGAGGAGGAGCCCATGGCC AAGCGGCCTCACACCCAAAGTGCAGGACTTTCAGACCAAGGCTTTCATGTGCCGCACTGA ATGCCAAGGTGACAACAGGTTCCTGCACTTTGTGTGTGTGTATGTTGGGCAGGGGTTGCT TTGGAAGGAGGTAGCAGTGTTAGTTAATGGTTATGGCTTTTGGGGGAGTGGCTGTCCTGG TTGTGACCAGGAAACCCCATTGGAGCAGGTGGGTGGCCTGGGAATAGGAAGGGCCACCGT GTCAACTCGTGGTGGGAGGGGAAGGAGCTCCTGTGCCACAGCCCCTCCTGGTAGGACTGA TAGACCTTCCCTCAGAGCCAAACCTATCCCGGTGTAGCTAGCAGAGGCCATCTTCTACCT AGCTTTTGGGCTCTTTCACTCTTGGAATTAAATTCTTAAAACATTGTGTTTTTTTTTCTG AATAAATTATAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCCAGGCCAAGAGCTGGCGTCGAGCGGCTGGAACCGTCCCCTAGTGCAGGAACCTGCG GTGTGAGGTGCGGCGGTGTGAGCGGCGGCACAGAGCATGTGCGGGCGGACGTCCTGCCAC CTGCCCTTGGAGGCCCTCACCCGGGCCTGCGCCTACCGGGACCGGCAGGGCCGCCAGCAG CTCCCGGAATGGAGGGACCCTGACCGGTACTACCCCTCGTACAACAAGAGCCCGCGGTCC AGCACGCCGGTGCTCCTGTCGCGGCGGCACCTGGAGAAGGGTGCAGACTCATCTGAGCGG ATCATTGCTCCCATGCGATGGGGCTTAGTCCCATCCTGGTTTAAAGAAGCTGATCCTTCC AAGCTGCAATTCAATACAACCAACTGCCGTAGTGATACCATAATGGAGAAACGGTCCTTC AAGGTGCCTCTGAGTAAGGGAAGGCGCTGTGTTGTTTTAGCAGATGGATTCTACGAGTGG CAGCGACATCCGGGAACATACCAGAAGCAGCCATACTTCATCTACTTCCCCCAAATCAAA ACAGAAAAGTCAGGCAGCATGGGCGCTGCAGACAATCCTGAGGACTGGGAGAAAGTCTGG GACAATTGGAGGCTGCTGACAATGGCTGGCATCTTTGACTGCTGGGACCCTCCAGAGGGA GGAGACTGCCTATATTCTTACACCATCATCACAGTAGAGTCCTGCCAAGGCTTGAATGAC ATCCACCACAGGATGCCTGCCATATTAGATGGAGAGGAGGCAGTCTCCAAATGGCTGGAC TTTGGCGAGGTCTCAGCCCAGGAAGCTCTGAAGTTAATCCATCCCACAGAGAACATCGCC TTCCATCCAGTCTCTACCGTGGTGAACAACTTCCGAAACGATACTCCTGAGTGTCTGCTT CCTGCCGACTTACTCGTCAAAAAGGAGTTCAAGCCAAGTGGCAGTAGCCAGAAGATGTTG CAGTGGCTGGCCACAAAGTCACCAAAAAAAGAAGACCCCAAAACACCAAAAAAGGCAGAG TCAGATGTGCCCCAGTGGTCCAGCCAGTTCCTACAGAAGAGCCCAGGCCCCCTCAAAAGA AGCAGTGCAGGACTCCTGGAGCGATGGCTGAAGCAAGAGAAGGAGGAGGAGCCCATGGCC AAGCGGCCTCACACCCAAAGTGCAGGACTTTCAGACCAAGGCTTTCATGTGCCGCACTGA ATGCCAAGGTGACAACAGGTTCCTGCACTTTGTGTGTGTGTATGTTGGGCAGGGGTTGCT TTGGAAGGAGGTAGCAGTGTTAGTTAATGGTTATGGCTTTTGGGGGAGTGGCTGTCCTGG TTGTGACCAGGAAACCCCATTGGAGCAGGTGGGTGGCCTGGGAATAGGAAGGGCCACCGT GTCAACTCGTGGTGGGAGGGGAAGGAGCTCCTGTGCCACAGCCCCTCCTGGTAGGACTGA TAGACCTTCCCTCAGAGCCAAACCTATCCCGGTGTAGCTAGCAGAGGCCATCTTCTACCT AGCTTTTGGGCTCTTTCACTCTTGGAATTAAATTCTTAAAACATTGTGTTTTTTTTTCTG AATAAATTATAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 87-306, gnl|bosTau2|chr22 (47506850-47507069) | |
| 87-306, gnl|canFam2|chr20 (5833896-5833708) | |
| 87-306, gnl|danRer3|chr14 (5719866-5720038) | |
| 87-306, gnl|dasNov1|scaffold_26531 (1768-1582) | |
| 87-306, gnl|echTel1|scaffold_116262 (245-430) | |
| 87-306, gnl|fr1|chrUn (112443114-112443300) | |
| 87-306, gnl|galGal2|chr12 (9167128-9167304) | |
| 87-306, gnl|hg17|chr3 (130481250-130481438) | |
| 87-306, gnl|Hg17|chr3 (130481269-130481460) | |
| 87-306, gnl|mm7|chr6 (87989583-87989770) | |
| 87-306, gnl|Mm7|chr6 (87989596-87989793) | |
| 87-306, gnl|monDom2|scaffold_5 (47686772-47686587) | |
| 87-306, gnl|oryCun1|scaffold_7044 (4139-4326) | |
| 87-306, gnl|panTro1|chr2_random (9094456-9094644) | |
| 87-306, gnl|rheMac2|chr11 (85562634-85562446) | |
| 87-306, gnl|rn3|chr4 (122380755-122380942) | |
| 87-306, gnl|tetNig1|chr11 (1026586-1026759) | |
| 87-306, gnl|xenTro1|scaffold_72 (1444802-1444628) | |
| 548-732, gnl|bosTau2|chr22 (47514966-47515150) | |
| 548-732, gnl|Hg17|chr3 (130499893-130500077) | |
| 548-732, gnl|Mm7|chr6 (88000723-88000904) | |
| 923-1245, gnl|bosTau2|chr22 (47499524-47499846) | |
| 923-1245, gnl|Hg17|chr3 (130506128-130506433) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 87-306, gnl|bosTau2|chr22 (47506850-47507069) | |
| 87-306, gnl|canFam2|chr20 (5833896-5833708) | |
| 87-306, gnl|danRer3|chr14 (5719866-5720038) | |
| 87-306, gnl|dasNov1|scaffold_26531 (1768-1582) | |
| 87-306, gnl|echTel1|scaffold_116262 (245-430) | |
| 87-306, gnl|fr1|chrUn (112443114-112443300) | |
| 87-306, gnl|galGal2|chr12 (9167128-9167304) | |
| 87-306, gnl|hg17|chr3 (130481250-130481438) | |
| 87-306, gnl|Hg17|chr3 (130481269-130481460) | |
| 87-306, gnl|mm7|chr6 (87989583-87989770) | |
| 87-306, gnl|Mm7|chr6 (87989596-87989793) | |
| 87-306, gnl|monDom2|scaffold_5 (47686772-47686587) | |
| 87-306, gnl|oryCun1|scaffold_7044 (4139-4326) | |
| 87-306, gnl|panTro1|chr2_random (9094456-9094644) | |
| 87-306, gnl|rheMac2|chr11 (85562634-85562446) | |
| 87-306, gnl|rn3|chr4 (122380755-122380942) | |
| 87-306, gnl|tetNig1|chr11 (1026586-1026759) | |
| 87-306, gnl|xenTro1|scaffold_72 (1444802-1444628) | |
| 548-732, gnl|bosTau2|chr22 (47514966-47515150) | |
| 548-732, gnl|Hg17|chr3 (130499893-130500077) | |
| 548-732, gnl|Mm7|chr6 (88000723-88000904) | |
| 923-1245, gnl|bosTau2|chr22 (47499524-47499846) | |
| 923-1245, gnl|Hg17|chr3 (130506128-130506433) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| che (0.272628) | |
| fce (0.271592) | |
| hea (0.204499) | |
| fli (0.202881) | |
| cje (0.165235) | |
| csp (0.161186) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| cov (0.132153) | |
| eep (0.122564) | |
| eru (0.120048) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (0.272628) | |
| fce (0.271592) | |
| hea (0.204499) | |
| fli (0.202881) | |
| cje (0.165235) | |
| csp (0.161186) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| cov (0.132153) | |
| eep (0.122564) | |
| eru (0.120048) | |
| cty (0.10408) | |
| jej (0.0989218) |