Non-Coding RNA Search

Ss1.1-Pig4-TMW8034E24.3

Sequence:


               
               AAGAGATCATGAAAAGGAATAGGGAGGGGGAATGTAATCCTTTCCAAATATCAAAAAAAA
GTAAAAAAAAGCCACCAAAATAATCCCCCCAAACACCAAAACAGGGTAGGCGAATGAAAC
TGAAATATCCAATTGAATTTTACCCAACCAGATCCATGGCTGTGGTACCTAATTAACTCT
TAGTTATTTCAGATTTCACTATTGCTATGTATTGTCAGTGCCTGTTATTGATTACACTTG
GTAGTGAGCAAAGAGAAAAGTTCAAAATCGGTAGAGAAGGAAGGGGAGAGGTACAGGGTT
TCCCTGCAATCAACTACAGTGTATACCGGGGGCGGGCAGCTGTTGCCCAAAGGAGCCATA
AGAAAAAACAGCGGAGTCACTGCCAACTTCCCCATCACCCACATTTTCACCCTCAGGCGG
CTGCTAATGCTGCTGCCAAGGAGAATCATGATGGCAGAGGGAAAGGGGGGCTTAATACGA
TATAATGATTCCGGCTCTGTGGTTAGACCTGATTAATGCCCGGGTTCCCAACAGCCCCAG
TCCTGCAATGAGTCCTACATGCCCCGAGGGAGCCTTCCCTATGAATTTGCCCCCGTGCAA
GACCGTGGGGAGTGCAACTTATCTTCTTGCGAGCATTGCTGAGGCAAAGGTGGCGGGTTC
TTCTCCCAAATCCCAGGCAGTGCCCGGGGACCACCTGCCTTCCACCTCCCAGGTCCCACC
CCCACCCTTTGCCTTCAGCTGCAGCGACTCACTCGCACCACGGGAGACACTGGATCACTC
GAGTTTTCACTCATTTCATCGTGGCAACAATACCCGCCCGGGTAGAGGAGGCGGGAGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAGATCATGAAAAGGAATAGGGAGGGGGAATGTAATCCTTTCCAAATATCAAAAAAAA
GTAAAAAAAAGCCACCAAAATAATCCCCCCAAACACCAAAACAGGGTAGGCGAATGAAAC
TGAAATATCCAATTGAATTTTACCCAACCAGATCCATGGCTGTGGTACCTAATTAACTCT
TAGTTATTTCAGATTTCACTATTGCTATGTATTGTCAGTGCCTGTTATTGATTACACTTG
GTAGTGAGCAAAGAGAAAAGTTCAAAATCGGTAGAGAAGGAAGGGGAGAGGTACAGGGTT
TCCCTGCAATCAACTACAGTGTATACCGGGGGCGGGCAGCTGTTGCCCAAAGGAGCCATA
AGAAAAAACAGCGGAGTCACTGCCAACTTCCCCATCACCCACATTTTCACCCTCAGGCGG
CTGCTAATGCTGCTGCCAAGGAGAATCATGATGGCAGAGGGAAAGGGGGGCTTAATACGA
TATAATGATTCCGGCTCTGTGGTTAGACCTGATTAATGCCCGGGTTCCCAACAGCCCCAG
TCCTGCAATGAGTCCTACATGCCCCGAGGGAGCCTTCCCTATGAATTTGCCCCCGTGCAA
GACCGTGGGGAGTGCAACTTATCTTCTTGCGAGCATTGCTGAGGCAAAGGTGGCGGGTTC
TTCTCCCAAATCCCAGGCAGTGCCCGGGGACCACCTGCCTTCCACCTCCCAGGTCCCACC
CCCACCCTTTGCCTTCAGCTGCAGCGACTCACTCGCACCACGGGAGACACTGGATCACTC
GAGTTTTCACTCATTTCATCGTGGCAACAATACCCGCCCGGGTAGAGGAGGCGGGAGAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9N0B2_MACFA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9N0B2_MACFA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               64-252, - strand, RNAz p=0.970584
               

               
               601-752, - strand, RNAz p=0.939918

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               64-252, - strand, RNAz p=0.970584
               

               
               601-752, - strand, RNAz p=0.939918

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_030939, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_030939, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-840, gnl|bosTau2|chr23 (26577837-26578698)
               

               
               1-840, gnl|Hg17|chr6 (24827318-24828154)
               

               
               1-840, gnl|Mm7|chr13 (24168737-24167874)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-840, gnl|bosTau2|chr23 (26577837-26578698)
               

               
               1-840, gnl|Hg17|chr6 (24827318-24828154)
               

               
               1-840, gnl|Mm7|chr13 (24168737-24167874)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cst (0.140036)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)
               

               
               cty (0.10408)

	64-252, - strand, RNAz p=0.970584
	601-752, - strand, RNAz p=0.939918

	1-840, gnl\|bosTau2\|chr23 (26577837-26578698)
	1-840, gnl\|Hg17\|chr6 (24827318-24828154)
	1-840, gnl\|Mm7\|chr13 (24168737-24167874)