Non-Coding RNA Search

Ss1.1-Pig4-TMW8034F02.5

Sequence:


               
               CTCCAGCCTCCAAAAGCCCTAGTGAAAGTCAGGCGGCTACCACTTCTCCCAGAGGAGCAA
AGCCCTCAGTGAAATCAGAATTAAGCCCTGTTACCAGGCAGACGTCGCAGACAGCTGGGT
CCAATAAAGGGCCTTCTAGATCAGGATCTAGAGATTCCACTCCTTCAAGACCTGCCCAGC
AACCACTCAGTAGGCCTATGCAGTCTCCAGGGAGAAACTCGATTTCTCCTGGTAGAAATG
GAATAAGTCCTCCTAACAAATTATCTCAACTACCAAGGACGTCATCCCCTAGTACTGCTT
CAACTAAGTCCTCAGGTTCGGGGAAAATGTCTTACACATCTCCAGGCAGACAGATGAGCC
AGACAAACCTTACCAAACAAACAGGTTTATCCAAGAATGGCAGCAGTATCCCAAGAAGTG
AGTCTGCCTCCAAAGGGCTAAATCAAATGAGTTGTAGCAATGGATCCAATAAAAAGGTAG
AACTTTCTAGAATGTCCTCAACTAAATCAAGTGGAAGTGAATCTGATAGATCAGAGAGAC
CTGTGTTAGTACGCCAGTCAACTTTCATCAAAGAAGCTCCAAGTCCAACCCTGAGGAGAA
AACTGGAGGAATCTGCTTCGTTTGAATCTCTTTCTCCATCTTCTCGACCAGATTCTCCCA
CTCGGTCCCAGGCACAGACTCCAGTTTTAAGTCCTTCTCTTCCTGATATGTCTCTGTCCA
CACATTCGTCCGTTCAGGCTGGTGGGTGGCGAAAACTCCCACCTAATCTCAGTCCCACCA
TCGAGTATAATGACGGAAGACCAATAAAGCGCCATGATATAGCACGCTCCCACTCTGAAA
GTCCTTCCAGACTTCCCATCAATAGGTCAGGAACCTGGAAACGTGAGCACAGCAAACACT
CATCATCCCTTCCTCGAGTAAGCACTTGGAGAAGAACTGGAAGTTCATCCTCAATTCTTT
CGGCTTCATCAGAGTCCAGTGAAAAGGCAAAAAGTGAGGATGAAAAACATGTGAACTCTA
TCTCGGGAACCAAACAAACTAAAGAAAGCCAAGTATCCACAAAAGGAACATGGAGGAAAA
TAAAAGAAAGTGAAATTTCTCCCACAAATACTACTTCTCAGACCACTTCCTCAGGTGCTG
CAAACGGTGCTGAATCCAAGACTCTAATTTATCAAATGGCACCTGCTGTTTCTAAAACAG
AGGATGTTTGGGTGAGAATCGAGGACTGTCCCATTAACAACCCCAGATCCGGAAGATCTC
CAACAGGAAATACCCCCCCTGTGATTGACACCGTTTCAGAAAAAGGAAACCCAAGCGCTA
AAGATTCAAAAGATAATCAGGGAAAACACAATGTGAGTAATGGTGGTGCTCCCACACGCA
CCATGGGTTTGGAAAACCGCCTGAACTCCTTTATTCAGGTTGATGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCAGCCTCCAAAAGCCCTAGTGAAAGTCAGGCGGCTACCACTTCTCCCAGAGGAGCAA
AGCCCTCAGTGAAATCAGAATTAAGCCCTGTTACCAGGCAGACGTCGCAGACAGCTGGGT
CCAATAAAGGGCCTTCTAGATCAGGATCTAGAGATTCCACTCCTTCAAGACCTGCCCAGC
AACCACTCAGTAGGCCTATGCAGTCTCCAGGGAGAAACTCGATTTCTCCTGGTAGAAATG
GAATAAGTCCTCCTAACAAATTATCTCAACTACCAAGGACGTCATCCCCTAGTACTGCTT
CAACTAAGTCCTCAGGTTCGGGGAAAATGTCTTACACATCTCCAGGCAGACAGATGAGCC
AGACAAACCTTACCAAACAAACAGGTTTATCCAAGAATGGCAGCAGTATCCCAAGAAGTG
AGTCTGCCTCCAAAGGGCTAAATCAAATGAGTTGTAGCAATGGATCCAATAAAAAGGTAG
AACTTTCTAGAATGTCCTCAACTAAATCAAGTGGAAGTGAATCTGATAGATCAGAGAGAC
CTGTGTTAGTACGCCAGTCAACTTTCATCAAAGAAGCTCCAAGTCCAACCCTGAGGAGAA
AACTGGAGGAATCTGCTTCGTTTGAATCTCTTTCTCCATCTTCTCGACCAGATTCTCCCA
CTCGGTCCCAGGCACAGACTCCAGTTTTAAGTCCTTCTCTTCCTGATATGTCTCTGTCCA
CACATTCGTCCGTTCAGGCTGGTGGGTGGCGAAAACTCCCACCTAATCTCAGTCCCACCA
TCGAGTATAATGACGGAAGACCAATAAAGCGCCATGATATAGCACGCTCCCACTCTGAAA
GTCCTTCCAGACTTCCCATCAATAGGTCAGGAACCTGGAAACGTGAGCACAGCAAACACT
CATCATCCCTTCCTCGAGTAAGCACTTGGAGAAGAACTGGAAGTTCATCCTCAATTCTTT
CGGCTTCATCAGAGTCCAGTGAAAAGGCAAAAAGTGAGGATGAAAAACATGTGAACTCTA
TCTCGGGAACCAAACAAACTAAAGAAAGCCAAGTATCCACAAAAGGAACATGGAGGAAAA
TAAAAGAAAGTGAAATTTCTCCCACAAATACTACTTCTCAGACCACTTCCTCAGGTGCTG
CAAACGGTGCTGAATCCAAGACTCTAATTTATCAAATGGCACCTGCTGTTTCTAAAACAG
AGGATGTTTGGGTGAGAATCGAGGACTGTCCCATTAACAACCCCAGATCCGGAAGATCTC
CAACAGGAAATACCCCCCCTGTGATTGACACCGTTTCAGAAAAAGGAAACCCAAGCGCTA
AAGATTCAAAAGATAATCAGGGAAAACACAATGTGAGTAATGGTGGTGCTCCCACACGCA
CCATGGGTTTGGAAAACCGCCTGAACTCCTTTATTCAGGTTGATGCCC

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

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               80-239, - strand, RNAz p=0.994072
               

               
               600-719, - strand, RNAz p=0.679849
               

               
               840-1039, - strand, RNAz p=0.975583
               

               
               1160-1279, - strand, RNAz p=0.551373

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-239, - strand, RNAz p=0.994072
               

               
               600-719, - strand, RNAz p=0.679849
               

               
               840-1039, - strand, RNAz p=0.975583
               

               
               1160-1279, - strand, RNAz p=0.551373

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               927-1024, + strand, RNAmicro p=0.998803
               

               
               921-1026, - strand, RNAmicro p=0.98532

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               927-1024, + strand, RNAmicro p=0.998803
               

               
               921-1026, - strand, RNAmicro p=0.98532

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1424, gnl|bosTau2|chr10 (9475938-9477361)
               

               
               1-1424, gnl|Hg17|chr5 (112205954-112207377)
               

               
               1-1424, gnl|Mm7|chr18 (34692281-34693701)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1424, gnl|bosTau2|chr10 (9475938-9477361)
               

               
               1-1424, gnl|Hg17|chr5 (112205954-112207377)
               

               
               1-1424, gnl|Mm7|chr18 (34692281-34693701)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               lin (0.145603)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)
               

               
               pgl (0.118483)

	80-239, - strand, RNAz p=0.994072
	600-719, - strand, RNAz p=0.679849
	840-1039, - strand, RNAz p=0.975583
	1160-1279, - strand, RNAz p=0.551373

	927-1024, + strand, RNAmicro p=0.998803
	921-1026, - strand, RNAmicro p=0.98532

	1-1424, gnl\|bosTau2\|chr10 (9475938-9477361)
	1-1424, gnl\|Hg17\|chr5 (112205954-112207377)
	1-1424, gnl\|Mm7\|chr18 (34692281-34693701)