Ss1.1-Pig4-TMW8034F04.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAGTCTGAAGAGGATGCGAGAAAAAACTCCCAGGTGGAAGAGGAAGAGCAGAATGAAGC CAAACAGAAAGAAAAGAGAATTCAGAGGACGAAGAGAGGACTGGAGATACTGGCAGAGAG AGCTGAGATGGTGGTGGATCCAGAAACCACACCGTATCTAGACATAGCCAACCAGACGGG CAGGTCCATCAGAATCCCTCCGTCAGAGAGAAAAGCCCTTATGTTAGCTATGGGATATCA TGAGAAGGGCAGAGCTTTCCTGAAACGAAAAGAATACGGAATAGCCTTGCCATTTCTGTT GGACGCTGACAAATATTTCTGCAAGTGCTGCACGGAGCTGCTGGATACGGTGGACAACTA CGCGGTGCTCCAGCTGGACATAGTGTGGTGCTACTTCCGCCTGGAACAGCTGGAATGCCT GGACGATGCAGAGAAAAAGTTAAGCTTGGCCCAGACATGCTTCAAAAATTGTTATGGAGA AAATCATCAGAGACTGGTCCACATAAAAGGAAATTGCGGAAAAGAGAAAGTCTTGTTTTT AAGACTTTACTTGCTTCAAGGCATCCGAAATTATCACAGCGGACGTGGTGAAGAGGCTCG TGACTATCTCAACAAGGCACGCCAGCTCTTTAAAGAGCTCTATATCGATCCATCAAAAGT TCACAGTTTGATGCAGTTGGGATTTACTGCTCAGGAGGCTCGGCTTGGCCTGAGGGCCTG TGATGGGAACGTGGACCACGCAGCTGCCCACATCACCAACCGCAGAGAGGAACTGGCCCA GATCAGGAAGGAAGAAAAGGAGAAGAAGCGGCGCCGCCTGGAGAACGTCAACTGTCTGAA AGGAATGGGCTACTCCGCTCACGCGGCCAGGCAGGCGCTGCACCAGGCCGCCGGCAACCT GGAGGAGGCCCTCAAGATTCTTATCAGTAACCCTCAGCTGTGGTGGTTAAATGATTCCGA TCCTGAAACCAACAGCCACCAAGAAAGTCCTTCTCAGGAAAACATCGACCAACTGGTGTA CATGGGCTTCGACGCGCTGGCGGCAGAGGCGGCCCTGCGGCTGTTCAGGGGGAACCTCCA GCTGGCAGCGCAGACCCTGGCTCACAACGGCGGCGGCCTCCCTCCCGACCTGCAGCTCGC GGCGGAAGACTGTTCGTCATCCACGCCGTCCACGTCCCCGTCCGATTCCGCAGGGACCTC TAGCGCCTCGACGGATGAAGACATGGAGACGGAGGCCGTCAATGAGATTCTGGAAGATAT TCCAGAACACGAAGAAGACTATCTTGACTCGACTCTGGAAGATGAGGAAATTATTATTGC CGAGTACTTATCCTATGTAGAAAACATCAAGGCAGCAGCAAAGCAAAACTAAGCGATGAA CAGAAATAAGTACTTCAGTTTCTGCTTATAAATTCTATCATATGACACGTGTAATGCAGG TCTTTTTTTTCTTTCTTTTTATCCATTTTGCTTCCTACTCAATGTAAGGGGCAGCAGGGA ACTGGGAGGTACACGAGAGAGACGCGGGGGTGGGGCGCACGCTTAGGAAATGAGCTGCCC CCTGGCCTGACCCTGCTGTTCCCCCTCCCCAGCCCCCCGACTCCCAGAGACAGGAAGGAC TGGAGAGGAGGGTGGCCTCCAGGGAGGGGCTCCTGGAGGGCAAGCTGGACCTGTCCCCTC CTTGCCCCGCCGAACCCGCTGCTGGTCATCTCCTCCCCACGATGCCGCTCTGCCCCCTCC CGAAAATGTCCTTTTTTAGATCCTCAACCATCCCAAGCGCTTTGGGCCTAAAGATGAGGC ATCGGCCACAGGAGCCATTCCAGTTGGGCCCGATGTCCTCAGCCTGAAACGTCAGTGTTT TGTGCTTAGGTTAGTAATACAGGCACTTAAAATTCAAGGCTGAGATTCAGAATTTTATAT GTATTCAAACTTCTTTACAGAAATAAAACGATTTATTAAATGGGAAGGTCTTAAAGGCTA ACCAAAGCAATTTATTTTTAATTAGCACATTAGATGCAGTGCTGTCAGACTAAGCTCACG GCTGCTGAGATACCTGTCAGAGATTGAGATATATTTTCTCCATGTTTTTGTGGGGGTTTT TGGTATATTACAGAAGACTATTTCTAAAGCTAGGTAGTTAGCCTCAAATAACCATTCTCT CTGCACCCTGCGTTCCTCTGTAAAGGTGAATTAAATGAAAACCCTCTCTAGCACCAGGAC ACAGCCAGGAGCAGCCTGGACTCTTCCTGCCCTTCCAGAAGTCACCGGAAGCTCCTGTGA CCGAGGGCAAATGGGTCCACGTCATTGCTGTCAAGGGGCTGGCCAAAACGCTTCAACTTT TTCACTAATCATTTACATAAAGCTTGGACAGCAGTCCCGGTTGGATGGGTGGAAATCTTT TCTTGTCATTCTTTTAAAATGGATGATACAGATGAAAATAAAAGATGGAAAATACATTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAGTCTGAAGAGGATGCGAGAAAAAACTCCCAGGTGGAAGAGGAAGAGCAGAATGAAGC CAAACAGAAAGAAAAGAGAATTCAGAGGACGAAGAGAGGACTGGAGATACTGGCAGAGAG AGCTGAGATGGTGGTGGATCCAGAAACCACACCGTATCTAGACATAGCCAACCAGACGGG CAGGTCCATCAGAATCCCTCCGTCAGAGAGAAAAGCCCTTATGTTAGCTATGGGATATCA TGAGAAGGGCAGAGCTTTCCTGAAACGAAAAGAATACGGAATAGCCTTGCCATTTCTGTT GGACGCTGACAAATATTTCTGCAAGTGCTGCACGGAGCTGCTGGATACGGTGGACAACTA CGCGGTGCTCCAGCTGGACATAGTGTGGTGCTACTTCCGCCTGGAACAGCTGGAATGCCT GGACGATGCAGAGAAAAAGTTAAGCTTGGCCCAGACATGCTTCAAAAATTGTTATGGAGA AAATCATCAGAGACTGGTCCACATAAAAGGAAATTGCGGAAAAGAGAAAGTCTTGTTTTT AAGACTTTACTTGCTTCAAGGCATCCGAAATTATCACAGCGGACGTGGTGAAGAGGCTCG TGACTATCTCAACAAGGCACGCCAGCTCTTTAAAGAGCTCTATATCGATCCATCAAAAGT TCACAGTTTGATGCAGTTGGGATTTACTGCTCAGGAGGCTCGGCTTGGCCTGAGGGCCTG TGATGGGAACGTGGACCACGCAGCTGCCCACATCACCAACCGCAGAGAGGAACTGGCCCA GATCAGGAAGGAAGAAAAGGAGAAGAAGCGGCGCCGCCTGGAGAACGTCAACTGTCTGAA AGGAATGGGCTACTCCGCTCACGCGGCCAGGCAGGCGCTGCACCAGGCCGCCGGCAACCT GGAGGAGGCCCTCAAGATTCTTATCAGTAACCCTCAGCTGTGGTGGTTAAATGATTCCGA TCCTGAAACCAACAGCCACCAAGAAAGTCCTTCTCAGGAAAACATCGACCAACTGGTGTA CATGGGCTTCGACGCGCTGGCGGCAGAGGCGGCCCTGCGGCTGTTCAGGGGGAACCTCCA GCTGGCAGCGCAGACCCTGGCTCACAACGGCGGCGGCCTCCCTCCCGACCTGCAGCTCGC GGCGGAAGACTGTTCGTCATCCACGCCGTCCACGTCCCCGTCCGATTCCGCAGGGACCTC TAGCGCCTCGACGGATGAAGACATGGAGACGGAGGCCGTCAATGAGATTCTGGAAGATAT TCCAGAACACGAAGAAGACTATCTTGACTCGACTCTGGAAGATGAGGAAATTATTATTGC CGAGTACTTATCCTATGTAGAAAACATCAAGGCAGCAGCAAAGCAAAACTAAGCGATGAA CAGAAATAAGTACTTCAGTTTCTGCTTATAAATTCTATCATATGACACGTGTAATGCAGG TCTTTTTTTTCTTTCTTTTTATCCATTTTGCTTCCTACTCAATGTAAGGGGCAGCAGGGA ACTGGGAGGTACACGAGAGAGACGCGGGGGTGGGGCGCACGCTTAGGAAATGAGCTGCCC CCTGGCCTGACCCTGCTGTTCCCCCTCCCCAGCCCCCCGACTCCCAGAGACAGGAAGGAC TGGAGAGGAGGGTGGCCTCCAGGGAGGGGCTCCTGGAGGGCAAGCTGGACCTGTCCCCTC CTTGCCCCGCCGAACCCGCTGCTGGTCATCTCCTCCCCACGATGCCGCTCTGCCCCCTCC CGAAAATGTCCTTTTTTAGATCCTCAACCATCCCAAGCGCTTTGGGCCTAAAGATGAGGC ATCGGCCACAGGAGCCATTCCAGTTGGGCCCGATGTCCTCAGCCTGAAACGTCAGTGTTT TGTGCTTAGGTTAGTAATACAGGCACTTAAAATTCAAGGCTGAGATTCAGAATTTTATAT GTATTCAAACTTCTTTACAGAAATAAAACGATTTATTAAATGGGAAGGTCTTAAAGGCTA ACCAAAGCAATTTATTTTTAATTAGCACATTAGATGCAGTGCTGTCAGACTAAGCTCACG GCTGCTGAGATACCTGTCAGAGATTGAGATATATTTTCTCCATGTTTTTGTGGGGGTTTT TGGTATATTACAGAAGACTATTTCTAAAGCTAGGTAGTTAGCCTCAAATAACCATTCTCT CTGCACCCTGCGTTCCTCTGTAAAGGTGAATTAAATGAAAACCCTCTCTAGCACCAGGAC ACAGCCAGGAGCAGCCTGGACTCTTCCTGCCCTTCCAGAAGTCACCGGAAGCTCCTGTGA CCGAGGGCAAATGGGTCCACGTCATTGCTGTCAAGGGGCTGGCCAAAACGCTTCAACTTT TTCACTAATCATTTACATAAAGCTTGGACAGCAGTCCCGGTTGGATGGGTGGAAATCTTT TCTTGTCATTCTTTTAAAATGGATGATACAGATGAAAATAAAAGATGGAAAATACATTCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 321-416, + strand, RNAz p=0.886981 | |
| 785-1308, - strand, RNAz p=0.999553 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 321-416, + strand, RNAz p=0.886981 | |
| 785-1308, - strand, RNAz p=0.999553 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 2-125, gnl|bosTau2|chr4 (68914693-68914816) | |
| 2-125, gnl|canFam2|chr16 (18312350-18312497) | |
| 2-125, gnl|dasNov1|scaffold_39360 (3266-3128) | |
| 2-125, gnl|echTel1|scaffold_76482 (1415-1266) | |
| 2-125, gnl|fr1|chrUn (117209547-117209443) | |
| 2-125, gnl|galGal2|chr2 (5659459-5659603) | |
| 2-125, gnl|hg17|chr7 (150490544-150490691) | |
| 2-125, gnl|Hg17|chr7 (150490564-150490687) | |
| 2-125, gnl|loxAfr1|scaffold_5424 (38973-38829) | |
| 2-125, gnl|mm7|chr5 (23737540-23737687) | |
| 2-125, gnl|Mm7|chr5 (23737560-23737683) | |
| 2-125, gnl|monDom2|scaffold_7 (11582440-11582587) | |
| 2-125, gnl|oryCun1|scaffold_204158 (45682-45829) | |
| 2-125, gnl|panTro1|chr6_random (16434722-16434575) | |
| 2-125, gnl|rheMac2|chr3 (188313034-188313181) | |
| 2-125, gnl|rn3|chr4 (5836290-5836143) | |
| 321-517, gnl|bosTau2|chr4 (68921354-68921550) | |
| 321-517, gnl|canFam2|chr16 (18320327-18320541) | |
| 321-517, gnl|danRer3|chrNA (7667002-7667198) | |
| 321-517, gnl|dasNov1|scaffold_109962 (2908-2694) | |
| 321-517, gnl|echTel1|scaffold_279149 (74575-74788) | |
| 321-517, gnl|fr1|chrUn (117208917-117208721) | |
| 321-517, gnl|galGal2|chr2 (5664045-5664251) | |
| 321-517, gnl|hg17|chr7 (150501656-150501869) | |
| 321-517, gnl|Hg17|chr7 (150501672-150501868) | |
| 321-517, gnl|loxAfr1|scaffold_20291 (5297-5510) | |
| 321-517, gnl|mm7|chr5 (23741829-23742036) | |
| 321-517, gnl|Mm7|chr5 (23741842-23742035) | |
| 321-517, gnl|monDom2|scaffold_7 (11594860-11595074) | |
| 321-517, gnl|oryCun1|scaffold_204158 (53456-53676) | |
| 321-517, gnl|panTro1|chr6_random (16423617-16423404) | |
| 321-517, gnl|rheMac2|chr3 (188321162-188321375) | |
| 321-517, gnl|rn3|chr4 (5828789-5828582) | |
| 321-517, gnl|tetNig1|chrUn_random (920681-920486) | |
| 321-517, gnl|xenTro1|scaffold_657 (21882-21670) | |
| 655-1032, gnl|bosTau2|chr12 (1051886-1052257) | |
| 655-1032, gnl|Mm7|chr5 (23743950-23748368) | |
| 1190-1534, gnl|bosTau2|chr4 (64219345-64218993) | |
| 1190-1534, gnl|Hg17|chr7 (150511777-150512106) | |
| 1190-1534, gnl|Mm7|chr5 (23749478-23749827) | |
| 1871-2238, gnl|bosTau2|chr4 (64218359-64217972) | |
| 1871-2238, gnl|Hg17|chr7 (150512574-150512970) | |
| 2267-2459, gnl|bosTau2|chr4 (64217921-64217736) | |
| 2267-2459, gnl|Hg17|chr7 (150513021-150513178) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-125, gnl|bosTau2|chr4 (68914693-68914816) | |
| 2-125, gnl|canFam2|chr16 (18312350-18312497) | |
| 2-125, gnl|dasNov1|scaffold_39360 (3266-3128) | |
| 2-125, gnl|echTel1|scaffold_76482 (1415-1266) | |
| 2-125, gnl|fr1|chrUn (117209547-117209443) | |
| 2-125, gnl|galGal2|chr2 (5659459-5659603) | |
| 2-125, gnl|hg17|chr7 (150490544-150490691) | |
| 2-125, gnl|Hg17|chr7 (150490564-150490687) | |
| 2-125, gnl|loxAfr1|scaffold_5424 (38973-38829) | |
| 2-125, gnl|mm7|chr5 (23737540-23737687) | |
| 2-125, gnl|Mm7|chr5 (23737560-23737683) | |
| 2-125, gnl|monDom2|scaffold_7 (11582440-11582587) | |
| 2-125, gnl|oryCun1|scaffold_204158 (45682-45829) | |
| 2-125, gnl|panTro1|chr6_random (16434722-16434575) | |
| 2-125, gnl|rheMac2|chr3 (188313034-188313181) | |
| 2-125, gnl|rn3|chr4 (5836290-5836143) | |
| 321-517, gnl|bosTau2|chr4 (68921354-68921550) | |
| 321-517, gnl|canFam2|chr16 (18320327-18320541) | |
| 321-517, gnl|danRer3|chrNA (7667002-7667198) | |
| 321-517, gnl|dasNov1|scaffold_109962 (2908-2694) | |
| 321-517, gnl|echTel1|scaffold_279149 (74575-74788) | |
| 321-517, gnl|fr1|chrUn (117208917-117208721) | |
| 321-517, gnl|galGal2|chr2 (5664045-5664251) | |
| 321-517, gnl|hg17|chr7 (150501656-150501869) | |
| 321-517, gnl|Hg17|chr7 (150501672-150501868) | |
| 321-517, gnl|loxAfr1|scaffold_20291 (5297-5510) | |
| 321-517, gnl|mm7|chr5 (23741829-23742036) | |
| 321-517, gnl|Mm7|chr5 (23741842-23742035) | |
| 321-517, gnl|monDom2|scaffold_7 (11594860-11595074) | |
| 321-517, gnl|oryCun1|scaffold_204158 (53456-53676) | |
| 321-517, gnl|panTro1|chr6_random (16423617-16423404) | |
| 321-517, gnl|rheMac2|chr3 (188321162-188321375) | |
| 321-517, gnl|rn3|chr4 (5828789-5828582) | |
| 321-517, gnl|tetNig1|chrUn_random (920681-920486) | |
| 321-517, gnl|xenTro1|scaffold_657 (21882-21670) | |
| 655-1032, gnl|bosTau2|chr12 (1051886-1052257) | |
| 655-1032, gnl|Mm7|chr5 (23743950-23748368) | |
| 1190-1534, gnl|bosTau2|chr4 (64219345-64218993) | |
| 1190-1534, gnl|Hg17|chr7 (150511777-150512106) | |
| 1190-1534, gnl|Mm7|chr5 (23749478-23749827) | |
| 1871-2238, gnl|bosTau2|chr4 (64218359-64217972) | |
| 1871-2238, gnl|Hg17|chr7 (150512574-150512970) | |
| 2267-2459, gnl|bosTau2|chr4 (64217921-64217736) | |
| 2267-2459, gnl|Hg17|chr7 (150513021-150513178) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| cje (0.495704) | |
| jej (0.395687) | |
| vin (0.332557) | |
| cte (0.29274) | |
| ste (0.270416) | |
| fcc (0.197785) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| cki (0.165235) | |
| mga (0.160205) | |
| cag (0.151194) | |
| lun (0.150489) | |
| fat (0.147427) | |
| lin (0.145603) | |
| spl (0.143184) | |
| nca (0.136874) | |
| che (0.136314) | |
| nmm (0.132802) | |
| ret (0.128733) | |
| sug (0.127291) | |
| thg (0.126791) | |
| ese (0.126502) | |
| bla (0.124347) | |
| tra (0.123092) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.495704) | |
| jej (0.395687) | |
| vin (0.332557) | |
| cte (0.29274) | |
| ste (0.270416) | |
| fcc (0.197785) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| cki (0.165235) | |
| mga (0.160205) | |
| cag (0.151194) | |
| lun (0.150489) | |
| fat (0.147427) | |
| lin (0.145603) | |
| spl (0.143184) | |
| nca (0.136874) | |
| che (0.136314) | |
| nmm (0.132802) | |
| ret (0.128733) | |
| sug (0.127291) | |
| thg (0.126791) | |
| ese (0.126502) | |
| bla (0.124347) | |
| tra (0.123092) |