Non-Coding RNA Search

Ss1.1-Pig4-TMW8034F10.3

Sequence:


               
               GAGGCCCTGGTTTAGTCGTGTTTTGGCTGCGCTGACCAAGAACGAGAACCCCAGGCCCTG
AGATGGGAAGGAAGGATTGGAGGCCTCCGCCCTCCTCCCCACTTTAGCTTGTAGAGACCA
GCCTATCTCTTTCAGCAAGGTCCTGCCAAGTTACCATAGCAACCAGCAACTCCAGGGTAC
CACAACAGATAATGGCTCAGTGAGCCCAGGGGTGGGGGGAGAGGAGTCTGGCCGGGTCAG
ATGACCCAGAGTTAAGTCTCAAACACTTAGAGAGGAGAGGAGGGACAGGAAAGGATCAAT
AGGTGGCTTAAGGAACAGGCAGGGGCCTCTGAGTCTTAGAGAGAGGCCACTGAAGGCGGC
AGAGCGGTCATTCTTGCGCCTGTCACCCACTCCCAGCCCCCGCCCACTTCCTGTTTCCAT
AACATTCCCACCTTGAACATGACCCTTTGATAGAAACAAAGCAAACCATATCTTTAGACA
ACAGTGTTATAAGGAGCCTCAAAGATAGTGGATGAAATCTAGGAGAGGAAGAGGGTCGTC
TGGTTTTGATTTTTAAAGAAGAGTATCTGAGTAAGAGTTTAAAAAAAAAAAGATTAAAAA
AGTTTTTAAAAAGGAAACCTATGCTGTTTAAATTGGAGCCCAGTTGTAACTTGGTAAAGG
CAAGCTTCTGTACCTTTGTTATAATTAATTGTATACCTGTGTATGTAAATATAAGGCATT
CCTATTTTGCAGTTCAGAACAAAAAAAAAACCTATTTGTAATATAGAATAAAGTTTATTA
AAAAATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGCCCTGGTTTAGTCGTGTTTTGGCTGCGCTGACCAAGAACGAGAACCCCAGGCCCTG
AGATGGGAAGGAAGGATTGGAGGCCTCCGCCCTCCTCCCCACTTTAGCTTGTAGAGACCA
GCCTATCTCTTTCAGCAAGGTCCTGCCAAGTTACCATAGCAACCAGCAACTCCAGGGTAC
CACAACAGATAATGGCTCAGTGAGCCCAGGGGTGGGGGGAGAGGAGTCTGGCCGGGTCAG
ATGACCCAGAGTTAAGTCTCAAACACTTAGAGAGGAGAGGAGGGACAGGAAAGGATCAAT
AGGTGGCTTAAGGAACAGGCAGGGGCCTCTGAGTCTTAGAGAGAGGCCACTGAAGGCGGC
AGAGCGGTCATTCTTGCGCCTGTCACCCACTCCCAGCCCCCGCCCACTTCCTGTTTCCAT
AACATTCCCACCTTGAACATGACCCTTTGATAGAAACAAAGCAAACCATATCTTTAGACA
ACAGTGTTATAAGGAGCCTCAAAGATAGTGGATGAAATCTAGGAGAGGAAGAGGGTCGTC
TGGTTTTGATTTTTAAAGAAGAGTATCTGAGTAAGAGTTTAAAAAAAAAAAGATTAAAAA
AGTTTTTAAAAAGGAAACCTATGCTGTTTAAATTGGAGCCCAGTTGTAACTTGGTAAAGG
CAAGCTTCTGTACCTTTGTTATAATTAATTGTATACCTGTGTATGTAAATATAAGGCATT
CCTATTTTGCAGTTCAGAACAAAAAAAAAACCTATTTGTAATATAGAATAAAGTTTATTA
AAAAATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-153, - strand, RNAz p=0.967428
               

               
               270-382, + strand, RNAz p=0.65463

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-153, - strand, RNAz p=0.967428
               

               
               270-382, + strand, RNAz p=0.65463

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               21-143, - strand, RNAmicro p=0.996205

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               21-143, - strand, RNAmicro p=0.996205

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-795, gnl|bosTau2|chr4 (51601189-51601991)
               

               
               1-795, gnl|Hg17|chr7 (131266140-131265358)
               

               
               1-795, gnl|Mm7|chr6 (32076316-32075502)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-795, gnl|bosTau2|chr4 (51601189-51601991)
               

               
               1-795, gnl|Hg17|chr7 (131266140-131265358)
               

               
               1-795, gnl|Mm7|chr6 (32076316-32075502)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               fco (0.157208)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               fco (0.157208)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	1-153, - strand, RNAz p=0.967428
	270-382, + strand, RNAz p=0.65463

	1-795, gnl\|bosTau2\|chr4 (51601189-51601991)
	1-795, gnl\|Hg17\|chr7 (131266140-131265358)
	1-795, gnl\|Mm7\|chr6 (32076316-32075502)

	fcc (0.197785)
	aor (0.195274)
	fco (0.157208)
	kid (0.129735)
	thg (0.126791)
	ecc (0.115035)
	cty (0.10408)