Non-Coding RNA Search

Ss1.1-Pig4-TMW8034F12.3

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATTACTCTCATGGTTTATTCATATTCA
GATTGAAAAAGGAGCCTTAGAGCCGCAAGTTACGCTAATTGGCACATTTGCTTTATTTAT
TTATTTTCAAAACAAACTGGGTTTTTTGAATTTTTTCCTTTTTGTTCATTCCATCACATT
GAAAAGGAGGAAAAGAAAAGTGGTTTTTGAATTCACTTGCTATTTTGGACTCCTCGGATG
AACGGAACATTGCACACACACTTGGAACAGAGAGAGATAGGAAAGTGGACTCCCACAGGG
CCACACGCACCAGATCAAAAAACTTGGATACAGTGCAAGAATTTCCCAAAATGATTGGAT
CATCATTACCAAAAACTCGCCATAACAACACCAAGAAACAAAAAATGTTTAAGCCACACT
GTTTGACTTGGGATCTTTCCTGCTTTTTTTTTTTTTTTTTAAATGTTTGCCACACAGAGA
GAAAGAGGGCTAGTGGGTGGGAGAGGACAGACTCACAGATGTGAGCAGGACAGGGAGGGA
AACTTCAGAGTGGAGTTGAGAAGAGGGCGGGGAGAGACAGGGCTCAGGAGAGGGGAGAGT
GGGACGTGGAAAGCCATTTCTTAAAGTTCAGGCATGTTCTTGGTCCGCCTCGCGTTCTTC
TCCTTTACCCTCATCCTGCCGGGCACTTTCCTTAGGTTTGGTTTCGTCTACAGCTTCTAT
CTTCTCCTCGGCTTGGCTGCTCTCCGCAGTCTCCGTTGGAGGCTGGGCTGTCGCCTTGGC
AGCAGCATCCTCTGCAGCAGGGGTGGTGGCGGCGGCAGCAGCAGCGGTGACAGCAGCAGG
CACGTCGGCTTGTTTAGGCTCCTCCTTGGCTGGCGCGTCTTCGGCCTTGGAGGACGGCGA
GTTGTCAGTGGAAGCTTTAGTGGCACTTTCTGTCTCAGCAGAGCCTGGCTTCTCCTCGGA
GGGGGCAGGAGCCTGGGGGGCTGCCTGCTCAGCGGCAGCGTCGGGGGCGCCCTCCCCCTT
CTTCTCCTCGGAAGGAGTGTCGCCAGCTTTGCCGGCCTCCTCAGCCTTGGGGCCAGTGGC
TGGGGCCGCTTCAGCGGGAGTGGCACCTTCGCCCTCCTTCTTCTCAGGGCCATCAGCGAC
GGGCGCTTCATCCTTCTCATTGGCCTCCGCCTCAGCGGCTGGGGCATCACCCTTCTTCTC
TCCTTTGAGCTTTTTCCTCGTTATGTGTCCACGGAAGCTAGCCTGAATTTTGGTTGCGGC
CTTATGAGCTTTATCTTCTGGTTTGATGCCATCTTGTTCAATCTTTTGGTCCTCATCATT
TTTTTCAACCTGTTTGGTTCTTCTCATACAGCACAGCATGGTTGTATCGTCCCTTGCCTT
CTTCCTGCCTTCTCTCCTTTCCTCCTCTCTCTTTCTTATTCCCCCCCTCTCCACCTCTTT
TCTGCTCGCTTGCTCACTCGCTCTCTCGCGCTAGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATTACTCTCATGGTTTATTCATATTCA
GATTGAAAAAGGAGCCTTAGAGCCGCAAGTTACGCTAATTGGCACATTTGCTTTATTTAT
TTATTTTCAAAACAAACTGGGTTTTTTGAATTTTTTCCTTTTTGTTCATTCCATCACATT
GAAAAGGAGGAAAAGAAAAGTGGTTTTTGAATTCACTTGCTATTTTGGACTCCTCGGATG
AACGGAACATTGCACACACACTTGGAACAGAGAGAGATAGGAAAGTGGACTCCCACAGGG
CCACACGCACCAGATCAAAAAACTTGGATACAGTGCAAGAATTTCCCAAAATGATTGGAT
CATCATTACCAAAAACTCGCCATAACAACACCAAGAAACAAAAAATGTTTAAGCCACACT
GTTTGACTTGGGATCTTTCCTGCTTTTTTTTTTTTTTTTTAAATGTTTGCCACACAGAGA
GAAAGAGGGCTAGTGGGTGGGAGAGGACAGACTCACAGATGTGAGCAGGACAGGGAGGGA
AACTTCAGAGTGGAGTTGAGAAGAGGGCGGGGAGAGACAGGGCTCAGGAGAGGGGAGAGT
GGGACGTGGAAAGCCATTTCTTAAAGTTCAGGCATGTTCTTGGTCCGCCTCGCGTTCTTC
TCCTTTACCCTCATCCTGCCGGGCACTTTCCTTAGGTTTGGTTTCGTCTACAGCTTCTAT
CTTCTCCTCGGCTTGGCTGCTCTCCGCAGTCTCCGTTGGAGGCTGGGCTGTCGCCTTGGC
AGCAGCATCCTCTGCAGCAGGGGTGGTGGCGGCGGCAGCAGCAGCGGTGACAGCAGCAGG
CACGTCGGCTTGTTTAGGCTCCTCCTTGGCTGGCGCGTCTTCGGCCTTGGAGGACGGCGA
GTTGTCAGTGGAAGCTTTAGTGGCACTTTCTGTCTCAGCAGAGCCTGGCTTCTCCTCGGA
GGGGGCAGGAGCCTGGGGGGCTGCCTGCTCAGCGGCAGCGTCGGGGGCGCCCTCCCCCTT
CTTCTCCTCGGAAGGAGTGTCGCCAGCTTTGCCGGCCTCCTCAGCCTTGGGGCCAGTGGC
TGGGGCCGCTTCAGCGGGAGTGGCACCTTCGCCCTCCTTCTTCTCAGGGCCATCAGCGAC
GGGCGCTTCATCCTTCTCATTGGCCTCCGCCTCAGCGGCTGGGGCATCACCCTTCTTCTC
TCCTTTGAGCTTTTTCCTCGTTATGTGTCCACGGAAGCTAGCCTGAATTTTGGTTGCGGC
CTTATGAGCTTTATCTTCTGGTTTGATGCCATCTTGTTCAATCTTTTGGTCCTCATCATT
TTTTTCAACCTGTTTGGTTCTTCTCATACAGCACAGCATGGTTGTATCGTCCCTTGCCTT
CTTCCTGCCTTCTCTCCTTTCCTCCTCTCTCTTTCTTATTCCCCCCCTCTCCACCTCTTT
TCTGCTCGCTTGCTCACTCGCTCTCTCGCGCTAGCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6S9D9_FELCA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6S9D9_FELCA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               261-453, - strand, RNAz p=0.981731
               

               
               717-1152, + strand, RNAz p=0.916369

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               261-453, - strand, RNAz p=0.981731
               

               
               717-1152, + strand, RNAz p=0.916369

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_002045, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_002045, -

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               30-699, gnl|bosTau2|chr1 (35538707-35538036)
               

               
               30-699, gnl|Hg17|chr3 (116923021-116922348)
               

               
               30-699, gnl|Mm7|chr16 (42008988-42009644)
               


               
               717-1331, gnl|bosTau2|chr1 (35455262-35454651)
               

               
               717-1331, gnl|Hg17|chr3 (116878147-116877548)
               

               
               717-1331, gnl|Mm7|chr16 (42052346-42052915)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-699, gnl|bosTau2|chr1 (35538707-35538036)
               

               
               30-699, gnl|Hg17|chr3 (116923021-116922348)
               

               
               30-699, gnl|Mm7|chr16 (42008988-42009644)
               


               
               717-1331, gnl|bosTau2|chr1 (35455262-35454651)
               

               
               717-1331, gnl|Hg17|chr3 (116878147-116877548)
               

               
               717-1331, gnl|Mm7|chr16 (42052346-42052915)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               ebs (2.48433)
               

               
               ece (1.83444)
               

               
               fcc (1.58228)
               

               
               ecc (1.03532)
               

               
               cbe (0.717703)
               

               
               hyp (0.714184)
               

               
               fce (0.543183)
               

               
               fbs (0.350693)
               

               
               eye (0.341006)
               

               
               fhi (0.339155)
               

               
               fco (0.314416)
               

               
               spc (0.226732)
               

               
               lyg (0.133103)
               

               
               cbr (0.127975)
               

               
               eep (0.122564)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (2.48433)
               

               
               ece (1.83444)
               

               
               fcc (1.58228)
               

               
               ecc (1.03532)
               

               
               cbe (0.717703)
               

               
               hyp (0.714184)
               

               
               fce (0.543183)
               

               
               fbs (0.350693)
               

               
               eye (0.341006)
               

               
               fhi (0.339155)
               

               
               fco (0.314416)
               

               
               spc (0.226732)
               

               
               lyg (0.133103)
               

               
               cbr (0.127975)
               

               
               eep (0.122564)

	261-453, - strand, RNAz p=0.981731
	717-1152, + strand, RNAz p=0.916369

	30-699, gnl\|bosTau2\|chr1 (35538707-35538036)
	30-699, gnl\|Hg17\|chr3 (116923021-116922348)
	30-699, gnl\|Mm7\|chr16 (42008988-42009644)

	717-1331, gnl\|bosTau2\|chr1 (35455262-35454651)
	717-1331, gnl\|Hg17\|chr3 (116878147-116877548)
	717-1331, gnl\|Mm7\|chr16 (42052346-42052915)

	ebs (2.48433)
	ece (1.83444)
	fcc (1.58228)
	ecc (1.03532)
	cbe (0.717703)
	hyp (0.714184)
	fce (0.543183)
	fbs (0.350693)
	eye (0.341006)
	fhi (0.339155)
	fco (0.314416)
	spc (0.226732)
	lyg (0.133103)
	cbr (0.127975)
	eep (0.122564)