Non-Coding RNA Search

Ss1.1-Pig4-TMW8034F14.3

Sequence:


               
               GAGCAGCTGGCGGAGCTGAACGGATCACCAGGTCAGCCATGTCATCTGAGCCTCCTCCTC
CATCACAGCCCCCCACCCACCAGTCCTCGGTCGGGCTGGACACTCAACGGGCCCGAGATC
GCTCACCGTCCCCTCTTCGGGGCAACGTGGTCCCAAGCCCGCTGCCCACTCGCCGGACAA
GGACCTTCTCAGCGACGGTGAGGGCTTCGCAGGGCCCCATCTACAAAGGAGTCTGCAAGT
GCTTCTGTCGATCCAAGGGTCATGGCTTCATTACCCCGGCTGACGGCGGCCCTGACATCT
TCCTGCACATCTCTGATGTGGAAGGGGAGTACGTCCCCGTGGAAGGCGACGAGGTCACCT
ATAAGATGTGCTCCATCCCGCCCAAGAACGAGAAGCTGCAGGCCGTGGAGGTGGTCATCA
CCCACCTGGCGCCGGGCACCAAGCACGAGACCTGGTCCGGCCACGTCGTCAGCTCCTAGG
AGAGGCCGGAAGCATCCATTCTTCCCGGCTTGGGGGAGCCTCGGGGAGGAGGAGGCAGGA
CCAAACTGGAGAGGACATTCTGTCGCTTGAGATGGGGCTTCAAGGGGGGAGTGTGGTCCC
TTTCAAGTGCTCCTGGAGGAAGGGGTGTGGGGGGCAGGCACTGGGTGCTCCTGGCCACCA
GCACAGCCTCTGACCATCGCCACCAACATCTCACCGTCTGAAAAACATTAAAAGCATTGA
AAAAGGAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCAGCTGGCGGAGCTGAACGGATCACCAGGTCAGCCATGTCATCTGAGCCTCCTCCTC
CATCACAGCCCCCCACCCACCAGTCCTCGGTCGGGCTGGACACTCAACGGGCCCGAGATC
GCTCACCGTCCCCTCTTCGGGGCAACGTGGTCCCAAGCCCGCTGCCCACTCGCCGGACAA
GGACCTTCTCAGCGACGGTGAGGGCTTCGCAGGGCCCCATCTACAAAGGAGTCTGCAAGT
GCTTCTGTCGATCCAAGGGTCATGGCTTCATTACCCCGGCTGACGGCGGCCCTGACATCT
TCCTGCACATCTCTGATGTGGAAGGGGAGTACGTCCCCGTGGAAGGCGACGAGGTCACCT
ATAAGATGTGCTCCATCCCGCCCAAGAACGAGAAGCTGCAGGCCGTGGAGGTGGTCATCA
CCCACCTGGCGCCGGGCACCAAGCACGAGACCTGGTCCGGCCACGTCGTCAGCTCCTAGG
AGAGGCCGGAAGCATCCATTCTTCCCGGCTTGGGGGAGCCTCGGGGAGGAGGAGGCAGGA
CCAAACTGGAGAGGACATTCTGTCGCTTGAGATGGGGCTTCAAGGGGGGAGTGTGGTCCC
TTTCAAGTGCTCCTGGAGGAAGGGGTGTGGGGGGCAGGCACTGGGTGCTCCTGGCCACCA
GCACAGCCTCTGACCATCGCCACCAACATCTCACCGTCTGAAAAACATTAAAAGCATTGA
AAAAGGAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               CHSP1_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               CHSP1_RAT

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               25-213, gnl|bosTau2|chr25 (6576604-6576796)
               

               
               25-213, gnl|Hg17|chr16 (8860700-8860495)
               

               
               25-213, gnl|Mm7|chr16 (8338078-8337870)
               


               
               318-727, gnl|bosTau2|chr25 (6579592-6580006)
               

               
               318-727, gnl|Hg17|chr16 (8856683-8856271)
               

               
               318-727, gnl|Mm7|chr16 (8334751-8334345)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-213, gnl|bosTau2|chr25 (6576604-6576796)
               

               
               25-213, gnl|Hg17|chr16 (8860700-8860495)
               

               
               25-213, gnl|Mm7|chr16 (8338078-8337870)
               


               
               318-727, gnl|bosTau2|chr25 (6579592-6580006)
               

               
               318-727, gnl|Hg17|chr16 (8856683-8856271)
               

               
               318-727, gnl|Mm7|chr16 (8334751-8334345)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               ute (0.265569)
               

               
               fty (0.17584)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 11 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.265569)
               

               
               fty (0.17584)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	25-213, gnl\|bosTau2\|chr25 (6576604-6576796)
	25-213, gnl\|Hg17\|chr16 (8860700-8860495)
	25-213, gnl\|Mm7\|chr16 (8338078-8337870)

	318-727, gnl\|bosTau2\|chr25 (6579592-6580006)
	318-727, gnl\|Hg17\|chr16 (8856683-8856271)
	318-727, gnl\|Mm7\|chr16 (8334751-8334345)

	ute (0.265569)
	fty (0.17584)
	nco (0.161734)
	csp (0.161186)
	hyp (0.142837)
	nca (0.136874)
	pla (0.133672)
	nmm (0.132802)
	eep (0.122564)
	jca (0.11396)
	eje (0.0988338)