Non-Coding RNA Search

Ss1.1-Pig4-TMW8034G17.3

Sequence:


               
               GCCTGGCGGGCCTGAGTGTGAGGTGCCGCTCATGGGCTACTCGGGGCCCGGCCCCCAGGG
ACCCCTCCCCACCAAGCCCTACATCTAGGCCTGGGAGCGACGGACCACCAAGGGCCCTCC
GCTGCCAGATCAAGGAAGTTCTCAGATCCCTACGAGGAGGACATGCCAGGACTGGGGTTG
TGTGACCTTAGCAAGTCCCTGCCCCTCTCCGGACCTTGGGCTCCTCATCTGTAAGATGCT
GGGACCCCGGTGAGACCTCTAAGGTCCCCCTCAGGCCAAGGGCCTGGAGCATGGCTCGGC
GCCATCCTCTGCAACATGCCAGCCTAGGGTGGGGCAGGCCTGCCGTGTGCTGGTAACACA
GGCCCGAGGCTGCTAAGCCCCGACCCCAAGGAGACTCTGGGCGCCAGTGAAGGAAGCCCC
CAGAGAAGACAGCAGAGGGAGTAGCGGGACCGGGGACAGGGCGTGTGGCCCTGGCTCGGC
CCCAGGGAGCGAAGGAACAAAAGAAACTGGAAAGAAAGATGATTTAGGAACAAGTTTTGC
TTTTGTTTTTTAAAATATATTTATAAAAGATCCTTTCCCATTTATTCTGGGAAAATGTTT
TTCAAACTCAGAGACAAGGACTTCGGTTTTTGTAAGACAAACGATGATATGAAGGTCTTT
TTTTAAGAAAAATAAAAGATGAAAGAAATCAGTGTGTTTCTGGGGCAGCTCATGGTGGGC
GAGGGTGGTGGCAGTGCGCCTGGTGGGGCCCTTTCTTCCCGTGGTGGCAGCAGCAGCCCA
GGTGGATTTCCTGAGGGCCTGGGTCCCATTAGGGGAACGGCCCTGGTAAGGCTTGCCCTC
CCCTTCAGCGGCCCCGTCAAAGGGGCCATTGTGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTGGCGGGCCTGAGTGTGAGGTGCCGCTCATGGGCTACTCGGGGCCCGGCCCCCAGGG
ACCCCTCCCCACCAAGCCCTACATCTAGGCCTGGGAGCGACGGACCACCAAGGGCCCTCC
GCTGCCAGATCAAGGAAGTTCTCAGATCCCTACGAGGAGGACATGCCAGGACTGGGGTTG
TGTGACCTTAGCAAGTCCCTGCCCCTCTCCGGACCTTGGGCTCCTCATCTGTAAGATGCT
GGGACCCCGGTGAGACCTCTAAGGTCCCCCTCAGGCCAAGGGCCTGGAGCATGGCTCGGC
GCCATCCTCTGCAACATGCCAGCCTAGGGTGGGGCAGGCCTGCCGTGTGCTGGTAACACA
GGCCCGAGGCTGCTAAGCCCCGACCCCAAGGAGACTCTGGGCGCCAGTGAAGGAAGCCCC
CAGAGAAGACAGCAGAGGGAGTAGCGGGACCGGGGACAGGGCGTGTGGCCCTGGCTCGGC
CCCAGGGAGCGAAGGAACAAAAGAAACTGGAAAGAAAGATGATTTAGGAACAAGTTTTGC
TTTTGTTTTTTAAAATATATTTATAAAAGATCCTTTCCCATTTATTCTGGGAAAATGTTT
TTCAAACTCAGAGACAAGGACTTCGGTTTTTGTAAGACAAACGATGATATGAAGGTCTTT
TTTTAAGAAAAATAAAAGATGAAAGAAATCAGTGTGTTTCTGGGGCAGCTCATGGTGGGC
GAGGGTGGTGGCAGTGCGCCTGGTGGGGCCCTTTCTTCCCGTGGTGGCAGCAGCAGCCCA
GGTGGATTTCCTGAGGGCCTGGGTCCCATTAGGGGAACGGCCCTGGTAAGGCTTGCCCTC
CCCTTCAGCGGCCCCGTCAAAGGGGCCATTGTGGGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               318-431, - strand, RNAz p=0.914218

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               318-431, - strand, RNAz p=0.914218

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               3-116, gnl|bosTau2|chr25 (4323805-4323917)
               

               
               3-116, gnl|Hg17|chr16 (4372816-4372929)
               

               
               3-116, gnl|Mm7|chr16 (4321900-4322013)
               


               
               121-704, gnl|bosTau2|chr25 (4323961-4324556)
               

               
               121-704, gnl|Hg17|chr16 (4372965-4373536)
               

               
               121-704, gnl|Mm7|chr16 (4322037-4322575)
               


               
               763-876, gnl|bosTau2|chr25 (4325712-4325825)
               

               
               763-876, gnl|Hg17|chr16 (4374769-4374886)
               

               
               763-876, gnl|Mm7|chr16 (4323681-4323789)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-116, gnl|bosTau2|chr25 (4323805-4323917)
               

               
               3-116, gnl|Hg17|chr16 (4372816-4372929)
               

               
               3-116, gnl|Mm7|chr16 (4321900-4322013)
               


               
               121-704, gnl|bosTau2|chr25 (4323961-4324556)
               

               
               121-704, gnl|Hg17|chr16 (4372965-4373536)
               

               
               121-704, gnl|Mm7|chr16 (4322037-4322575)
               


               
               763-876, gnl|bosTau2|chr25 (4325712-4325825)
               

               
               763-876, gnl|Hg17|chr16 (4374769-4374886)
               

               
               763-876, gnl|Mm7|chr16 (4323681-4323789)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               cga (0.279096)
               

               
               eru (0.240096)
               

               
               ebs (0.236602)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               jca (0.11396)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               eru (0.240096)
               

               
               ebs (0.236602)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               jca (0.11396)

	3-116, gnl\|bosTau2\|chr25 (4323805-4323917)
	3-116, gnl\|Hg17\|chr16 (4372816-4372929)
	3-116, gnl\|Mm7\|chr16 (4321900-4322013)

	121-704, gnl\|bosTau2\|chr25 (4323961-4324556)
	121-704, gnl\|Hg17\|chr16 (4372965-4373536)
	121-704, gnl\|Mm7\|chr16 (4322037-4322575)

	763-876, gnl\|bosTau2\|chr25 (4325712-4325825)
	763-876, gnl\|Hg17\|chr16 (4374769-4374886)
	763-876, gnl\|Mm7\|chr16 (4323681-4323789)

	cga (0.279096)
	eru (0.240096)
	ebs (0.236602)
	nep (0.183925)
	fty (0.17584)
	ton (0.1755)
	pla (0.133672)
	cov (0.132153)
	jca (0.11396)