Non-Coding RNA Search

Ss1.1-Pig4-TMW8034G21.3

Sequence:


               
               CAGGTTAAGGATCTGGTGTGGTCACTATAGTGTCTTGGGTCGCTGCTGTGGCGTGAGTTT
GACCCCTGGCCCGAGAACTTCCATATGCCCTGGGTGCAACCAATTAAAAAAAAAGAAAGA
AAGAAAAAGAAGTGGTGGGAGGTAGAGGTCCTTCAAATTCAGCAGGTTAGCAAGCAATCA
GCTTAGAATTCCCCTTCTTAGTAGGTGTGATTCTTATTCTCTCAGGTTTTTAATGACTTA
GTCACTTGAGATGAAATACTTAAAAAGTAGCTTTTTCACTTTGGAGTTCCTCAAACTCGA
TGTTTTCACTAGTTCATAGTGTTGGGAACAGTATTGTGTCCATCACTAAGACCCTTACAT
AGAGTCTGCAATTTTGTATGTCACATTGCCAGAGAAGGCTTAGTGGGTTTTGACTCTAAT
ACAAGTTGGCTTATATCAGCATGAGTTTTGATTTCCCATAATTTCACGTTTTAATCACTC
ATTATTTGGGTTAAACTGGACTCATTTCAAGTAATTTGCTTTTGTTAAATATGTAATGAG
AAGCATAATAATTTGACTTGAGCCATAAAACTCATTTTAATATTAACTTGTATTTATCAA
GCTTGTTTTTGTGAAAAAACTAAAACCTACGTCAGTCTAGATTAAGCCAGTTTAGATGTA
ATTTGTATTTTAGTGATGGATTGTATCCTAAGACTAGAGCTAAATGGGAAAATGTGTTAT
GTTCTGTTAAAGGAAAGATCAGTGCATTTAAAAACTTAAATTTCCATTATTGTGGTTTCA
TTTTGTAGTGTACAAGCATCATTTGTAGTTTGGCTTTGACAATTTTTCTGGCATTAAGTT
TATAGAAAAATGTATAGAAGAAACTGTTTGAAGTTTTGGTTATATTTTTATATTTGTAAA
GTAAAAGTTTGATTAAAATAGTCACTGTTCTTTTTAAATTTAATTTTATTGTCATTTCAA
TAAAAAAATTAAAACAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGTTAAGGATCTGGTGTGGTCACTATAGTGTCTTGGGTCGCTGCTGTGGCGTGAGTTT
GACCCCTGGCCCGAGAACTTCCATATGCCCTGGGTGCAACCAATTAAAAAAAAAGAAAGA
AAGAAAAAGAAGTGGTGGGAGGTAGAGGTCCTTCAAATTCAGCAGGTTAGCAAGCAATCA
GCTTAGAATTCCCCTTCTTAGTAGGTGTGATTCTTATTCTCTCAGGTTTTTAATGACTTA
GTCACTTGAGATGAAATACTTAAAAAGTAGCTTTTTCACTTTGGAGTTCCTCAAACTCGA
TGTTTTCACTAGTTCATAGTGTTGGGAACAGTATTGTGTCCATCACTAAGACCCTTACAT
AGAGTCTGCAATTTTGTATGTCACATTGCCAGAGAAGGCTTAGTGGGTTTTGACTCTAAT
ACAAGTTGGCTTATATCAGCATGAGTTTTGATTTCCCATAATTTCACGTTTTAATCACTC
ATTATTTGGGTTAAACTGGACTCATTTCAAGTAATTTGCTTTTGTTAAATATGTAATGAG
AAGCATAATAATTTGACTTGAGCCATAAAACTCATTTTAATATTAACTTGTATTTATCAA
GCTTGTTTTTGTGAAAAAACTAAAACCTACGTCAGTCTAGATTAAGCCAGTTTAGATGTA
ATTTGTATTTTAGTGATGGATTGTATCCTAAGACTAGAGCTAAATGGGAAAATGTGTTAT
GTTCTGTTAAAGGAAAGATCAGTGCATTTAAAAACTTAAATTTCCATTATTGTGGTTTCA
TTTTGTAGTGTACAAGCATCATTTGTAGTTTGGCTTTGACAATTTTTCTGGCATTAAGTT
TATAGAAAAATGTATAGAAGAAACTGTTTGAAGTTTTGGTTATATTTTTATATTTGTAAA
GTAAAAGTTTGATTAAAATAGTCACTGTTCTTTTTAAATTTAATTTTATTGTCATTTCAA
TAAAAAAATTAAAACAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               464-572, + strand, RNAz p=0.622341

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               464-572, + strand, RNAz p=0.622341

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_007006, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_007006, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               266-979, gnl|bosTau2|chr18 (23912753-23912036)
               

               
               266-979, gnl|Hg17|chr16 (55021252-55020546)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               266-979, gnl|bosTau2|chr18 (23912753-23912036)
               

               
               266-979, gnl|Hg17|chr16 (55021252-55020546)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               ret (0.3862)
               

               
               sin (0.349895)
               

               
               vin (0.332557)
               

               
               hea (0.204499)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.3862)
               

               
               sin (0.349895)
               

               
               vin (0.332557)
               

               
               hea (0.204499)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	266-979, gnl\|bosTau2\|chr18 (23912753-23912036)
	266-979, gnl\|Hg17\|chr16 (55021252-55020546)

	ret (0.3862)
	sin (0.349895)
	vin (0.332557)
	hea (0.204499)
	rec (0.17307)
	fco (0.157208)
	liv (0.146284)
	spl (0.143184)
	ste (0.135208)
	cty (0.10408)
	jej (0.0989218)