Non-Coding RNA Search

Ss1.1-Pig4-TMW8034H03.3

Sequence:


               
               AAATCCCTTAGCCCGGACATCTCTGAACAATTAGGGCAAAAGCATAAGGCCAGCGGATGG
GGGTGGGAGCATAGCCAAGAGCTGGCCAGAGTCCGAGCTACTCTCCCCCCAAACCCAGGC
ACCGTGGGGGGCCTCTTCATGGATGGGGAGGAGGCCACAGCCCCTGAGGACGTCAGCAAG
TGGACAGTGGACGATGTCTGCAGCTTTGTGGGGGGCCTGTCCGGCTGTGGAGAATATGCA
CCGGTCTTCAGAGAACAGGGGATTGACGGGGAGACCTTGCCCCTGCTGACAGAGGAGCAC
CTCCTGACCACCATGGGGCTGAAGCTGGGGCCTGCTCTCAAGATCCGGGCCCAGGTGGCC
AAGCGCCTGGGCCGTGTCTTCTACATGGCCAGCTTCCCTGTGGCTCTGCCGCTGCAGCCA
CCAACGCTGCGGGCTCCTGATCGGGAGCTCACTTCAGGGGAGCGGCCCCTGTCCCCGACA
ATGGCCCCCTCCCCCTATGGGGGGACCCACCCCCCCGTTGGCCGAGCCTCACCCAAGCAA
GAGAACGGCAGCATGGCTCTGCTCCCAGGGGCCACAGACCCCTCTCAGCCTCTTTGTTGA
GCCGGTGTCAGACCCCAACCCTTTGGCACCAGCTGCTCCAGTGCAAAGGCCCCTCCCCCC
ACAGCTTATTTTCCTTTCGGTTTTAAATGCAAAAACACAATTGTTAAAAGGAAAACACAG
GACTAAAGAGGAAAGGAATGAGTTTCCAGAGAGACTCGGGGGTGACTATAGAGCCTGGTG
TGGGTGGCCTGGCGACCCGAATCTGGGAAGCTGCAGATAAACCAAAGACGAAGGAGGCCC
ACAGGGCACCTCACGCCACGCCGGCTGAGCCCACCGGCTCCCCCTGGAAGCATGCCTGCT
CTGCATCCTGACCTCCAGTGGAGCCCCCGCTCCAGATCAGCTTCCAGCTCACCCACCACC
ACAGGGTGCGGCAAGCAGGCTCCATGGCGCTGGTTTACACCCCCATGGCTGCCACGTGAG
GAGCTGGAACAGCACTTGGTACTTCCTGGTCTTTTATGTTGTAAAAAAATAAAGCCCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATCCCTTAGCCCGGACATCTCTGAACAATTAGGGCAAAAGCATAAGGCCAGCGGATGG
GGGTGGGAGCATAGCCAAGAGCTGGCCAGAGTCCGAGCTACTCTCCCCCCAAACCCAGGC
ACCGTGGGGGGCCTCTTCATGGATGGGGAGGAGGCCACAGCCCCTGAGGACGTCAGCAAG
TGGACAGTGGACGATGTCTGCAGCTTTGTGGGGGGCCTGTCCGGCTGTGGAGAATATGCA
CCGGTCTTCAGAGAACAGGGGATTGACGGGGAGACCTTGCCCCTGCTGACAGAGGAGCAC
CTCCTGACCACCATGGGGCTGAAGCTGGGGCCTGCTCTCAAGATCCGGGCCCAGGTGGCC
AAGCGCCTGGGCCGTGTCTTCTACATGGCCAGCTTCCCTGTGGCTCTGCCGCTGCAGCCA
CCAACGCTGCGGGCTCCTGATCGGGAGCTCACTTCAGGGGAGCGGCCCCTGTCCCCGACA
ATGGCCCCCTCCCCCTATGGGGGGACCCACCCCCCCGTTGGCCGAGCCTCACCCAAGCAA
GAGAACGGCAGCATGGCTCTGCTCCCAGGGGCCACAGACCCCTCTCAGCCTCTTTGTTGA
GCCGGTGTCAGACCCCAACCCTTTGGCACCAGCTGCTCCAGTGCAAAGGCCCCTCCCCCC
ACAGCTTATTTTCCTTTCGGTTTTAAATGCAAAAACACAATTGTTAAAAGGAAAACACAG
GACTAAAGAGGAAAGGAATGAGTTTCCAGAGAGACTCGGGGGTGACTATAGAGCCTGGTG
TGGGTGGCCTGGCGACCCGAATCTGGGAAGCTGCAGATAAACCAAAGACGAAGGAGGCCC
ACAGGGCACCTCACGCCACGCCGGCTGAGCCCACCGGCTCCCCCTGGAAGCATGCCTGCT
CTGCATCCTGACCTCCAGTGGAGCCCCCGCTCCAGATCAGCTTCCAGCTCACCCACCACC
ACAGGGTGCGGCAAGCAGGCTCCATGGCGCTGGTTTACACCCCCATGGCTGCCACGTGAG
GAGCTGGAACAGCACTTGGTACTTCCTGGTCTTTTATGTTGTAAAAAAATAAAGCCCTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61863776|ref|XP_610938.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61863776|ref|XP_610938.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               352-510, + strand, RNAz p=0.932619

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               352-510, + strand, RNAz p=0.932619

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               17-245, gnl|bosTau2|chr16 (41342810-41342583)
               

               
               17-245, gnl|Hg17|chr1 (918686-918902)
               


               
               352-708, gnl|bosTau2|chr16 (41342062-41341711)
               

               
               352-708, gnl|Hg17|chr1 (919428-919801)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-245, gnl|bosTau2|chr16 (41342810-41342583)
               

               
               17-245, gnl|Hg17|chr1 (918686-918902)
               


               
               352-708, gnl|bosTau2|chr16 (41342062-41341711)
               

               
               352-708, gnl|Hg17|chr1 (919428-919801)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cga (0.279096)
               

               
               eye (0.170503)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               eye (0.170503)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	17-245, gnl\|bosTau2\|chr16 (41342810-41342583)
	17-245, gnl\|Hg17\|chr1 (918686-918902)

	352-708, gnl\|bosTau2\|chr16 (41342062-41341711)
	352-708, gnl\|Hg17\|chr1 (919428-919801)

	cga (0.279096)
	eye (0.170503)
	cst (0.140036)
	pla (0.133672)
	eru (0.120048)
	ecc (0.115035)
	nbm (0.0993246)