Non-Coding RNA Search

Ss1.1-Pig4-TMW8034H09.3

Sequence:


               
               GTAAATTAACCAAATTTAAAGAAGTGTAGGATGACTCTTTAAATGGATTAAAATACATTT
CATGTTCAGTTGATAAGGTCATTGAAGTGGGATAATGCAGTTAGATAGACAAGCTAAAAA
GGAAAACGAATATATTTTGTGATCCTTACTGTTTCATTGCACTATTCTTTACTGCAGCTT
AGCCATATATATTTCTATATTCTGAGTATTAAGCTGATATGTAGCTAAAGATTTCCTACA
GTTCTGGTAACTGGTAACTAGTGCTGTGGAAGGTTTTGGTGTTGTAACATTCCCCATGTT
GTGAGTTATATATTGTATATGAAAGATGACTAATAAATTGGAGTAATATATTTATCTAGA
GCTGGGAAAATATGCTAATTATTTTCAAATCTTCAAGTAAGATGTATTGAATTTTTTCTT
CCTCTTAAGTGAGATGAAAGTCTCCCTTTTAGGTTAAAATGGCTATTTATACAACAGGTG
TCTCCTTTTACTGGTTTTATTAATGTTCGTATTAAAATGTTTCTTATCTTTTTATACCAA
AACCCCGATCACGCTGGTGACGCAAACTGCCACGATGTATTTTAGTTTGCAGGACTTTTG
GCAGGCAAAATATTTAATAACAAACCAGCTTTGTATATTTTATGGCTTGGGGGGCAAGAA
TTTTACCTTTGAATCTCTATATGAGGCAGTGCTCTTATCAGCAAAGTCAGTAAAAGACAG
TGTTACTTACAATCATCAGTAGAAGGTTTTTACAAGTTGTATAAATCAGTGCATTTATTT
ATTATGTCGTGAAATTTAACCTTTCTACAAAATGCATATTCTAGCTCTTTTTTTGTTACT
GCTGTTGCTTTGAGTGTAATAGCTCTGTTCATGATTCTGCTTGTGTACTTGAAGTACTCA
TTTCTGTCAAACAGATGCCCAGTTTTTTTCCATGTAAAAAAATGGTATTCTTTACCGTCA
GAGGTAACTGCAAAGTAATAGTTTATTAGGACTTTGTCAAAACATAATTTTCATGGTTAA
AATAAATACCGAAAAAAGGCATACTAGCCAAATTGAAATGACCCATCTTGAGAATTTAAT
GTAGTCAGGGAAGTCATGCCATATTTTGCCAATGTATGTTTTATCTTCAAGTCAGAACTT
CTTTTCTGTGATAAATTTTCAATTTTTGTTGTAAAAGAGATCTCCGTGATTTTACTGCCA
ATATGACCTTCAAATCAACATTAAGAATTTTGAGGGAGTTCCCCCGTAACCTAGCAGTTA
AGGATGCGGGGTCATCACTGCTATGGCGCATGTTCAGCCCCTGACCTGGGAACTTCTACA
AGCCTCAGGCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAAATTAACCAAATTTAAAGAAGTGTAGGATGACTCTTTAAATGGATTAAAATACATTT
CATGTTCAGTTGATAAGGTCATTGAAGTGGGATAATGCAGTTAGATAGACAAGCTAAAAA
GGAAAACGAATATATTTTGTGATCCTTACTGTTTCATTGCACTATTCTTTACTGCAGCTT
AGCCATATATATTTCTATATTCTGAGTATTAAGCTGATATGTAGCTAAAGATTTCCTACA
GTTCTGGTAACTGGTAACTAGTGCTGTGGAAGGTTTTGGTGTTGTAACATTCCCCATGTT
GTGAGTTATATATTGTATATGAAAGATGACTAATAAATTGGAGTAATATATTTATCTAGA
GCTGGGAAAATATGCTAATTATTTTCAAATCTTCAAGTAAGATGTATTGAATTTTTTCTT
CCTCTTAAGTGAGATGAAAGTCTCCCTTTTAGGTTAAAATGGCTATTTATACAACAGGTG
TCTCCTTTTACTGGTTTTATTAATGTTCGTATTAAAATGTTTCTTATCTTTTTATACCAA
AACCCCGATCACGCTGGTGACGCAAACTGCCACGATGTATTTTAGTTTGCAGGACTTTTG
GCAGGCAAAATATTTAATAACAAACCAGCTTTGTATATTTTATGGCTTGGGGGGCAAGAA
TTTTACCTTTGAATCTCTATATGAGGCAGTGCTCTTATCAGCAAAGTCAGTAAAAGACAG
TGTTACTTACAATCATCAGTAGAAGGTTTTTACAAGTTGTATAAATCAGTGCATTTATTT
ATTATGTCGTGAAATTTAACCTTTCTACAAAATGCATATTCTAGCTCTTTTTTTGTTACT
GCTGTTGCTTTGAGTGTAATAGCTCTGTTCATGATTCTGCTTGTGTACTTGAAGTACTCA
TTTCTGTCAAACAGATGCCCAGTTTTTTTCCATGTAAAAAAATGGTATTCTTTACCGTCA
GAGGTAACTGCAAAGTAATAGTTTATTAGGACTTTGTCAAAACATAATTTTCATGGTTAA
AATAAATACCGAAAAAAGGCATACTAGCCAAATTGAAATGACCCATCTTGAGAATTTAAT
GTAGTCAGGGAAGTCATGCCATATTTTGCCAATGTATGTTTTATCTTCAAGTCAGAACTT
CTTTTCTGTGATAAATTTTCAATTTTTGTTGTAAAAGAGATCTCCGTGATTTTACTGCCA
ATATGACCTTCAAATCAACATTAAGAATTTTGAGGGAGTTCCCCCGTAACCTAGCAGTTA
AGGATGCGGGGTCATCACTGCTATGGCGCATGTTCAGCCCCTGACCTGGGAACTTCTACA
AGCCTCAGGCAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               196-314, + strand, RNAz p=0.540796

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               196-314, + strand, RNAz p=0.540796

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1210, gnl|bosTau2|chr12 (3746257-3747446)
               

               
               2-1210, gnl|Hg17|chr13 (41707557-41708751)
               

               
               2-1210, gnl|Mm7|chr14 (73245958-73244807)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1210, gnl|bosTau2|chr12 (3746257-3747446)
               

               
               2-1210, gnl|Hg17|chr13 (41707557-41708751)
               

               
               2-1210, gnl|Mm7|chr14 (73245958-73244807)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               hyp (0.285673)
               

               
               cut (0.169924)
               

               
               tra (0.123092)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.285673)
               

               
               cut (0.169924)
               

               
               tra (0.123092)

	2-1210, gnl\|bosTau2\|chr12 (3746257-3747446)
	2-1210, gnl\|Hg17\|chr13 (41707557-41708751)
	2-1210, gnl\|Mm7\|chr14 (73245958-73244807)