Non-Coding RNA Search

Ss1.1-Pig4-TMW8034H10.5

Sequence:


               
               CACTATGGATACAGGTTTTTTTGTTTGCTTGCTTGCTTTTTTTCTTTTTTTTGCCATGCC
TGCAGCAAGTGGAAGTTCCTGGGCCAGGGACTGAACCCATGCCACAGCAGCCACCCAAAA
GATGGCAGTGACAATGCTGGATCATTAACCACTAGGCCACCAGGGCACACCCATCCCGAT
TTTCTTTGAATTCTATGAACTGCACGTTATTTTATGTGCTTTATTTTTATTTTATCATGT
GTAAGCCAGGTATTGGTTTTATGGTTTAAACACTAATGGGTACCGTTTCTTTGCACAATT
TGAATCTTGATATCTCTTCAAGAGAATGTTTTAGGGTTCTCAGGTAATTCAGGTAAGAGA
TAAAATATGCATTGCATTTTTCTAGATTTTTGTGCACTCCTGCATTAGAGGTTTGAATCA
TTAATTTTCATGATCAAAATCCTGTTTAGAAAAAAACCGAAAACTCTATTTCTTTATTAT
TATTTTTATTTTTAGGGCTGCACTTGTGGCACATGGAAGTTCCCAGGGTAGGGGTCAAAT
TGGAGCTATAGCTGCCAGCCTACACCACAGCCATAGCAAGGCCAGCTCCCAGCTGCATCT
GTGAGCTACTCCATGGCTCACAGCAATGCCAGATCCTTAACCCCCTGAGCAAGGCCAGGA
TTGAACCTGCATCCTCATGGATACCAGTCAGGTTCGTGACCACTGAGCCACAATGGGAAC
TCCAAAACTCTGTTTCTTAATTATCTGTCTCTTCTTTAGAATATCTGTGTTCTTAGCATT
TAGTTCTTAAATAAAGAACTCTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTATGGATACAGGTTTTTTTGTTTGCTTGCTTGCTTTTTTTCTTTTTTTTGCCATGCC
TGCAGCAAGTGGAAGTTCCTGGGCCAGGGACTGAACCCATGCCACAGCAGCCACCCAAAA
GATGGCAGTGACAATGCTGGATCATTAACCACTAGGCCACCAGGGCACACCCATCCCGAT
TTTCTTTGAATTCTATGAACTGCACGTTATTTTATGTGCTTTATTTTTATTTTATCATGT
GTAAGCCAGGTATTGGTTTTATGGTTTAAACACTAATGGGTACCGTTTCTTTGCACAATT
TGAATCTTGATATCTCTTCAAGAGAATGTTTTAGGGTTCTCAGGTAATTCAGGTAAGAGA
TAAAATATGCATTGCATTTTTCTAGATTTTTGTGCACTCCTGCATTAGAGGTTTGAATCA
TTAATTTTCATGATCAAAATCCTGTTTAGAAAAAAACCGAAAACTCTATTTCTTTATTAT
TATTTTTATTTTTAGGGCTGCACTTGTGGCACATGGAAGTTCCCAGGGTAGGGGTCAAAT
TGGAGCTATAGCTGCCAGCCTACACCACAGCCATAGCAAGGCCAGCTCCCAGCTGCATCT
GTGAGCTACTCCATGGCTCACAGCAATGCCAGATCCTTAACCCCCTGAGCAAGGCCAGGA
TTGAACCTGCATCCTCATGGATACCAGTCAGGTTCGTGACCACTGAGCCACAATGGGAAC
TCCAAAACTCTGTTTCTTAATTATCTGTCTCTTCTTTAGAATATCTGTGTTCTTAGCATT
TAGTTCTTAAATAAAGAACTCTTG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               178-474, gnl|bosTau2|chr20 (23201356-23201647)
               

               
               178-474, gnl|Hg17|chr20 (37014696-37015101)
               

               
               178-474, gnl|Mm7|chr2 (158527125-158527385)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               178-474, gnl|bosTau2|chr20 (23201356-23201647)
               

               
               178-474, gnl|Hg17|chr20 (37014696-37015101)
               

               
               178-474, gnl|Mm7|chr2 (158527125-158527385)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cst (0.140036)
               

               
               thg (0.126791)
               

               
               ese (0.126502)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)
               

               
               thg (0.126791)
               

               
               ese (0.126502)

	178-474, gnl\|bosTau2\|chr20 (23201356-23201647)
	178-474, gnl\|Hg17\|chr20 (37014696-37015101)
	178-474, gnl\|Mm7\|chr2 (158527125-158527385)