Non-Coding RNA Search

Ss1.1-Pig4-TMW8034H12.3

Sequence:


               
               TTTTGTTATGGATATGCCAGTCCCCAGTCTCTCTGTTTTTGAACAATTCATCATTTGGCT
CAGGAAAGTAATCTTCAAGTTACTCTTTTGTTCCATCCCTGATTTTAATACTTAGTATAT
TCCTACCCAGCTCCCAGCTCTGACATACCCTTAGGTAGAAAGTTACTGCTTCTTTAAATT
GAATGATGATTGATATTGTTGAATAGAAATGTGGAGGTGCAGAGGTTAAAAAAAACACTG
TCATAGTTCCTTTGAGCAGAGCAGCCATTGTCAGGGGCAGATGAACCAGATTTGGTTTTA
TTTAAAAGAATCTTTCATTTGATTAGTCCTTGTTTAAATTGTTTGCTACTAGAGTAATTT
CTTTTTCTAATAATATGTAGGAGAATTTCTAGTATGTCTGGTCCCCCTTTTAAAGAGACA
GTTCCCTTTAAATTTGTAGGTATGTCATGATGCTGCCTCTTAATCTTTTAAGTAGCTTTT
ATTTATTAGAGCTTAGTTCTTGTTTCTTTAGTCTCTAAGTGTGCCAAAGATGAATACCAT
TTCTACCTGTGGTAGCAGCTAATTGGTTAAGTATCAGTGGCAGAGCTCTCCTATCCCAGA
TTGTCAGCACTGTTTAGCATTACCCCTTTTTAGTCTGTTCCTCCTCTGCTCACATTTAGA
CACTCAGAACCTAGTTTTTGGCATTGTGCTCTACCCTTGGAGAGGTTGCCCAATTTTATA
TAGAATGGAAAAGGCAGAATTTTTCAAAAAATAGCATTTGTAGTTAACTTGCCAGTTCTT
GATCTTGTGATGCTATTTCAATCCAAAACGTACTATTACTTGTTTTGTTGTTAGCAGAAT
TAAGGGTAAGTAATGTCATTCAATTTTTGTCTTTAGTCTTTTGGAATGGTTTCTTTAACT
TCTATTGAGCTTCTGTTGCAGGTATTGGACATGGGCGTATCTTCTAACGATGTCATCATC
ATTAGCATATTCTTCCTGCTAAAAATAAATAATCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTGTTATGGATATGCCAGTCCCCAGTCTCTCTGTTTTTGAACAATTCATCATTTGGCT
CAGGAAAGTAATCTTCAAGTTACTCTTTTGTTCCATCCCTGATTTTAATACTTAGTATAT
TCCTACCCAGCTCCCAGCTCTGACATACCCTTAGGTAGAAAGTTACTGCTTCTTTAAATT
GAATGATGATTGATATTGTTGAATAGAAATGTGGAGGTGCAGAGGTTAAAAAAAACACTG
TCATAGTTCCTTTGAGCAGAGCAGCCATTGTCAGGGGCAGATGAACCAGATTTGGTTTTA
TTTAAAAGAATCTTTCATTTGATTAGTCCTTGTTTAAATTGTTTGCTACTAGAGTAATTT
CTTTTTCTAATAATATGTAGGAGAATTTCTAGTATGTCTGGTCCCCCTTTTAAAGAGACA
GTTCCCTTTAAATTTGTAGGTATGTCATGATGCTGCCTCTTAATCTTTTAAGTAGCTTTT
ATTTATTAGAGCTTAGTTCTTGTTTCTTTAGTCTCTAAGTGTGCCAAAGATGAATACCAT
TTCTACCTGTGGTAGCAGCTAATTGGTTAAGTATCAGTGGCAGAGCTCTCCTATCCCAGA
TTGTCAGCACTGTTTAGCATTACCCCTTTTTAGTCTGTTCCTCCTCTGCTCACATTTAGA
CACTCAGAACCTAGTTTTTGGCATTGTGCTCTACCCTTGGAGAGGTTGCCCAATTTTATA
TAGAATGGAAAAGGCAGAATTTTTCAAAAAATAGCATTTGTAGTTAACTTGCCAGTTCTT
GATCTTGTGATGCTATTTCAATCCAAAACGTACTATTACTTGTTTTGTTGTTAGCAGAAT
TAAGGGTAAGTAATGTCATTCAATTTTTGTCTTTAGTCTTTTGGAATGGTTTCTTTAACT
TCTATTGAGCTTCTGTTGCAGGTATTGGACATGGGCGTATCTTCTAACGATGTCATCATC
ATTAGCATATTCTTCCTGCTAAAAATAAATAATCAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-996, gnl|bosTau2|chr24 (16352108-16353076)
               

               
               1-996, gnl|Hg17|chr18 (31860473-31859566)
               

               
               1-996, gnl|Mm7|chr18 (24891114-24890096)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-996, gnl|bosTau2|chr24 (16352108-16353076)
               

               
               1-996, gnl|Hg17|chr18 (31860473-31859566)
               

               
               1-996, gnl|Mm7|chr18 (24891114-24890096)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               lin (0.436808)
               

               
               thg (0.253582)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.436808)
               

               
               thg (0.253582)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	1-996, gnl\|bosTau2\|chr24 (16352108-16353076)
	1-996, gnl\|Hg17\|chr18 (31860473-31859566)
	1-996, gnl\|Mm7\|chr18 (24891114-24890096)

	lin (0.436808)
	thg (0.253582)
	ski (0.146735)
	liv (0.146284)
	lyg (0.133103)
	nmm (0.132802)
	tra (0.123092)
	ecc (0.115035)
	nbm (0.0993246)
	eje (0.0988338)