Non-Coding RNA Search

Ss1.1-Pig4-TMW8034I03.5

Sequence:


               
               ACCCACGCCGTCCGCGCAGAGCCTATGGCCTCCCCTCGCCTGCTCGCGCTGCTGCTGCTC
CTCGTGGGAGCCTTTAACGCCGCCGCCGCCGAGTCGATCCGAGAGACCGAGGTCATCAAC
CCCCAGGACCTCCTAGAAGGCCGATACTTCTCCGGAGACCTACCGGATGACGAGGATGTT
GGGGGGCCGGGGCAGGAACCTGATGACTTTGAGTGGTCTGGCTCTGGAGATCTGGAGGGT
CCAGAGGACAAGCATATGCTCCCGGAAGTGACACACCCCTTGGTGCCTCTAGACAACCAC
ATCCCTGAGAGGACCGGACCCGGGGGCCGGGTCCCCACCGAACCCAAGGAACTGGAGGAG
AATGAGGTCATTCCCAAGAGGATGTCCCCCTTTGATGGGGACGAGGATGTGTCCAACAAG
GTGTCCATGTCCAGCACCGCCCAGGGCAGCAACATCTTCGAGAGGACAGAGGTTCTGTCA
GCTCTGATTGTGGGCGGCATCGTGGGCATCCTCTTTGCTGTTTTGCTGGTCCTGCTGCTG
GTGTATCGGATGAAGAAGAAGGACGAGGGCAGCTACGACCTGAGCAAGAAACCCATCTTC
AAAAAAGCCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCACGCCGTCCGCGCAGAGCCTATGGCCTCCCCTCGCCTGCTCGCGCTGCTGCTGCTC
CTCGTGGGAGCCTTTAACGCCGCCGCCGCCGAGTCGATCCGAGAGACCGAGGTCATCAAC
CCCCAGGACCTCCTAGAAGGCCGATACTTCTCCGGAGACCTACCGGATGACGAGGATGTT
GGGGGGCCGGGGCAGGAACCTGATGACTTTGAGTGGTCTGGCTCTGGAGATCTGGAGGGT
CCAGAGGACAAGCATATGCTCCCGGAAGTGACACACCCCTTGGTGCCTCTAGACAACCAC
ATCCCTGAGAGGACCGGACCCGGGGGCCGGGTCCCCACCGAACCCAAGGAACTGGAGGAG
AATGAGGTCATTCCCAAGAGGATGTCCCCCTTTGATGGGGACGAGGATGTGTCCAACAAG
GTGTCCATGTCCAGCACCGCCCAGGGCAGCAACATCTTCGAGAGGACAGAGGTTCTGTCA
GCTCTGATTGTGGGCGGCATCGTGGGCATCCTCTTTGCTGTTTTGCTGGTCCTGCTGCTG
GTGTATCGGATGAAGAAGAAGGACGAGGGCAGCTACGACCTGAGCAAGAAACCCATCTTC
AAAAAAGCCCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8HZJ6_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8HZJ6_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               282-400, - strand, RNAz p=0.744851

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               282-400, - strand, RNAz p=0.744851

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               96-248, gnl|bosTau2|chr13 (55502868-55503017)
               

               
               96-248, gnl|Hg17|chr20 (43397975-43397826)
               

               
               96-248, gnl|Mm7|chr2 (164171968-164171831)
               


               
               282-481, gnl|bosTau2|chr13 (55505400-55505593)
               

               
               282-481, gnl|Hg17|chr20 (43392619-43392420)
               

               
               282-481, gnl|Mm7|chr2 (164169743-164169547)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               96-248, gnl|bosTau2|chr13 (55502868-55503017)
               

               
               96-248, gnl|Hg17|chr20 (43397975-43397826)
               

               
               96-248, gnl|Mm7|chr2 (164171968-164171831)
               


               
               282-481, gnl|bosTau2|chr13 (55505400-55505593)
               

               
               282-481, gnl|Hg17|chr20 (43392619-43392420)
               

               
               282-481, gnl|Mm7|chr2 (164169743-164169547)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	96-248, gnl\|bosTau2\|chr13 (55502868-55503017)
	96-248, gnl\|Hg17\|chr20 (43397975-43397826)
	96-248, gnl\|Mm7\|chr2 (164171968-164171831)

	282-481, gnl\|bosTau2\|chr13 (55505400-55505593)
	282-481, gnl\|Hg17\|chr20 (43392619-43392420)
	282-481, gnl\|Mm7\|chr2 (164169743-164169547)