Non-Coding RNA Search

Ss1.1-Pig4-TMW8034J01.5

Sequence:


               
               GGATGCTCAAGAATTGGGCTGGGAAGAAACGGTGGATGCTGCTATTTCCCACCTCTTGAA
GACCTGCCTGTCGAAGAGTTCAAAGGAGCAGGCTCTGAACCTCAGCAGCCAGTTGAGTAT
CCCCAAAGACACAAGCCGATTGAAGAAGCATATCACTTTGCTCTGCGATCGATTAGCCAA
AGGTGGACGTCTCTGCTTAAGTACGGATGCAGTGGCTCCGCAGACCATGGTTATGCCAGG
TGGCTGTGCTACGATCCCAGAATCAGACCTAGAGGAAAGATCAATAGAACAAGACTCCAC
TGAACTGTTTACGAACCACAAACACCTCATCATGGAGACACCCATGCCTGAAGTTTCACC
CCTCCAAGGAGTCTCAGAATAGTCAAAGTAGAGTTGTCTGGTTGAGGGGAAGATGGCCTT
CCCGAGGCTGAACCTGTATGGACCTCATGCCAAGCACAGACGAAAGGCTGGCCCAGGTGC
TTCACCCAGCTCACCTGCCACAAGATGACACTAGGTAGAAATGGGAATCGGGACTTTTTA
TTTTTAGGAGGATTTGCAATACTATGGGCAAGTCAGTTGAACTTGTCTTACCAGGAAAGG
ATGTTGCTGCTCTTTGGTCATCTGTATGCTTTCAGCCACAGGATATAGTGAGATAACATC
TTCTGGGGACAGCCTTTATAATACAAAGACCTAAATCCTATTTGATACCCCAATTTTTTC
ACAGAGTTCTTATATAGTAAATGTATCAAGTTTAATAAAGCATCTCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATGCTCAAGAATTGGGCTGGGAAGAAACGGTGGATGCTGCTATTTCCCACCTCTTGAA
GACCTGCCTGTCGAAGAGTTCAAAGGAGCAGGCTCTGAACCTCAGCAGCCAGTTGAGTAT
CCCCAAAGACACAAGCCGATTGAAGAAGCATATCACTTTGCTCTGCGATCGATTAGCCAA
AGGTGGACGTCTCTGCTTAAGTACGGATGCAGTGGCTCCGCAGACCATGGTTATGCCAGG
TGGCTGTGCTACGATCCCAGAATCAGACCTAGAGGAAAGATCAATAGAACAAGACTCCAC
TGAACTGTTTACGAACCACAAACACCTCATCATGGAGACACCCATGCCTGAAGTTTCACC
CCTCCAAGGAGTCTCAGAATAGTCAAAGTAGAGTTGTCTGGTTGAGGGGAAGATGGCCTT
CCCGAGGCTGAACCTGTATGGACCTCATGCCAAGCACAGACGAAAGGCTGGCCCAGGTGC
TTCACCCAGCTCACCTGCCACAAGATGACACTAGGTAGAAATGGGAATCGGGACTTTTTA
TTTTTAGGAGGATTTGCAATACTATGGGCAAGTCAGTTGAACTTGTCTTACCAGGAAAGG
ATGTTGCTGCTCTTTGGTCATCTGTATGCTTTCAGCCACAGGATATAGTGAGATAACATC
TTCTGGGGACAGCCTTTATAATACAAAGACCTAAATCCTATTTGATACCCCAATTTTTTC
ACAGAGTTCTTATATAGTAAATGTATCAAGTTTAATAAAGCATCTCAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1835633|gb|AAB46606.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1835633|gb|AAB46606.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               52-158, - strand, RNAz p=0.609844

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               52-158, - strand, RNAz p=0.609844

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               16-241, gnl|bosTau2|chr7 (46286574-46286799)
               

               
               16-241, gnl|canFam2|chr14 (48519377-48519558)
               

               
               16-241, gnl|danRer3|chrNA (149949439-149949255)
               

               
               16-241, gnl|dasNov1|scaffold_48778 (7691-7873)
               

               
               16-241, gnl|fr1|chrUn (279908837-279909030)
               

               
               16-241, gnl|galGal2|chr2 (46903742-46903561)
               

               
               16-241, gnl|hg17|chr7 (33346802-33346983)
               

               
               16-241, gnl|Hg17|chr7 (33346805-33347030)
               

               
               16-241, gnl|loxAfr1|scaffold_74 (26543-26362)
               

               
               16-241, gnl|mm7|chr9 (22691284-22691465)
               

               
               16-241, gnl|Mm7|chr9 (22691287-22691512)
               

               
               16-241, gnl|monDom2|scaffold_5 (34321-34502)
               

               
               16-241, gnl|oryCun1|scaffold_195021 (72210-72029)
               

               
               16-241, gnl|panTro1|chr6 (34499403-34499584)
               

               
               16-241, gnl|rheMac2|chr3 (92622960-92622779)
               

               
               16-241, gnl|rn3|chr8 (22479695-22479876)
               

               
               16-241, gnl|tetNig1|chrUn_random (41433992-41433799)
               

               
               16-241, gnl|xenTro1|scaffold_241 (571323-571504)
               


               
               347-768, gnl|bosTau2|chr1 (9536578-9536156)
               

               
               347-768, gnl|Hg17|chr7 (33418043-33418474)
               

               
               347-768, gnl|Mm7|chr9 (22767120-22767532)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-241, gnl|bosTau2|chr7 (46286574-46286799)
               

               
               16-241, gnl|canFam2|chr14 (48519377-48519558)
               

               
               16-241, gnl|danRer3|chrNA (149949439-149949255)
               

               
               16-241, gnl|dasNov1|scaffold_48778 (7691-7873)
               

               
               16-241, gnl|fr1|chrUn (279908837-279909030)
               

               
               16-241, gnl|galGal2|chr2 (46903742-46903561)
               

               
               16-241, gnl|hg17|chr7 (33346802-33346983)
               

               
               16-241, gnl|Hg17|chr7 (33346805-33347030)
               

               
               16-241, gnl|loxAfr1|scaffold_74 (26543-26362)
               

               
               16-241, gnl|mm7|chr9 (22691284-22691465)
               

               
               16-241, gnl|Mm7|chr9 (22691287-22691512)
               

               
               16-241, gnl|monDom2|scaffold_5 (34321-34502)
               

               
               16-241, gnl|oryCun1|scaffold_195021 (72210-72029)
               

               
               16-241, gnl|panTro1|chr6 (34499403-34499584)
               

               
               16-241, gnl|rheMac2|chr3 (92622960-92622779)
               

               
               16-241, gnl|rn3|chr8 (22479695-22479876)
               

               
               16-241, gnl|tetNig1|chrUn_random (41433992-41433799)
               

               
               16-241, gnl|xenTro1|scaffold_241 (571323-571504)
               


               
               347-768, gnl|bosTau2|chr1 (9536578-9536156)
               

               
               347-768, gnl|Hg17|chr7 (33418043-33418474)
               

               
               347-768, gnl|Mm7|chr9 (22767120-22767532)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hea (0.204499)
               

               
               spc (0.113366)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               spc (0.113366)

	16-241, gnl\|bosTau2\|chr7 (46286574-46286799)
	16-241, gnl\|canFam2\|chr14 (48519377-48519558)
	16-241, gnl\|danRer3\|chrNA (149949439-149949255)
	16-241, gnl\|dasNov1\|scaffold_48778 (7691-7873)
	16-241, gnl\|fr1\|chrUn (279908837-279909030)
	16-241, gnl\|galGal2\|chr2 (46903742-46903561)
	16-241, gnl\|hg17\|chr7 (33346802-33346983)
	16-241, gnl\|Hg17\|chr7 (33346805-33347030)
	16-241, gnl\|loxAfr1\|scaffold_74 (26543-26362)
	16-241, gnl\|mm7\|chr9 (22691284-22691465)
	16-241, gnl\|Mm7\|chr9 (22691287-22691512)
	16-241, gnl\|monDom2\|scaffold_5 (34321-34502)
	16-241, gnl\|oryCun1\|scaffold_195021 (72210-72029)
	16-241, gnl\|panTro1\|chr6 (34499403-34499584)
	16-241, gnl\|rheMac2\|chr3 (92622960-92622779)
	16-241, gnl\|rn3\|chr8 (22479695-22479876)
	16-241, gnl\|tetNig1\|chrUn_random (41433992-41433799)
	16-241, gnl\|xenTro1\|scaffold_241 (571323-571504)

	347-768, gnl\|bosTau2\|chr1 (9536578-9536156)
	347-768, gnl\|Hg17\|chr7 (33418043-33418474)
	347-768, gnl\|Mm7\|chr9 (22767120-22767532)