Non-Coding RNA Search

Ss1.1-Pig4-TMW8034J03.3

Sequence:


               
               GGAGTTGGGACAGAAGGGTACTCTGCACGAAATCTTTGCCTTGCTATGTGCTGCTCTATG
TGTATATGTGGTAATTTTTTTTTTTTTTTTTTTGGAACTACGTGAAAGTCCTGGCGATGC
TACCATTATCCCTTGGAGAGGTGGCTCAAAAGTTACAGGGAACTCCACATCCTTGATTAC
TGCCTTCTTTTTAAAAGCACAACACTCCTCTCTAACTCTCCCTGCTCCTCTCCCCTCCTG
GTTGGGTCATGCAGTTACCCTGTTTTCTAGGACAAAAGTTCTCAGTCACTGTGCAATATG
GCCTCTTGGGTCCCAGGAGGGTCTGGAGGAGAACTGGCTCTTACAACCTTCTGGTGCCTT
GGCAGGCTTAGGGAACCATCTCTCCCTCTGTCCTTGGGACTATGGCTGGATCCTCAGCCT
TGCAGTATTCCTTGGCCGAATGGGAGAATGCCCCAAGTTCTGCAGGACTACTTGGTATTT
TTGTAGGGCTGACACTAAAAGCCAAACCTTGGGCATTGTTTTTTTCTTCCCCGTGCTCAG
AGCACCTGTGGGAGATGTTGCCGTCTCTCAGTACAATCCAAATTTGTCTGTAGACTTGTG
CAATATTTACTGTTTTGGGTTGCAGAAAAATGCAAAACTACACTGGGAAGAAATCCTCTT
CCTTCAGGTTTTCAGTGGTATTAGTGAGGGGTCCTCAGAAGGCCTTGAGTATCGCAAACC
CAAGACCATCTCAAGAAGGATGGAGCTAGAACATCTGGTCAACCTGGCTACCCTCCTGCC
ATTGCCCCTTGTGGAGAAAACTTCCTCCCCACTGCCAGTCCCCTTTCCTGGATTTCTTAA
CTACTCAGTTCTGATTCAAAGGTGCTATTTACCAAACACTTTCCCTACCCATTCCTGCCA
GTTCTGCCTCTTCAACGTTCCAGATCCCCAGCTACCATCCCAGCCCCTGTTTCCAGTCTT
TATTGCTTTAAAGGTAACTTTGGGCCCACAGACCCAAGAGCTAATTTTCTGGCCTGTGGG
TTGAAACAAAGCTGTGAATCACTGCAGATTATGTTGTTGCATCTTGTTGGCAAACAGGCC
CCTGCCTTTTTATAAGCAGCCTCATAGTCTCATGCTTAATCTTTTCTCTCTTCTTTTTGA
TGTTCACTTTAAAATCAACAAAACACCCAGAGCTGGACTGTTGAGCAGGCCTGTCTCTCC
TATTAAGTAAAAATAAATAATAGTAGTTTGTAAGCTATTCTGATAGAAAAGACAAAGGTT
ACTAATTGTATAATAGTGTTTTATATGGAAGAATGTACAGGTTTATGGACAAATGTACAC
CTTTTTTTGTTACTTTAATAAAAATCTAGCAGATGAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGTTGGGACAGAAGGGTACTCTGCACGAAATCTTTGCCTTGCTATGTGCTGCTCTATG
TGTATATGTGGTAATTTTTTTTTTTTTTTTTTTGGAACTACGTGAAAGTCCTGGCGATGC
TACCATTATCCCTTGGAGAGGTGGCTCAAAAGTTACAGGGAACTCCACATCCTTGATTAC
TGCCTTCTTTTTAAAAGCACAACACTCCTCTCTAACTCTCCCTGCTCCTCTCCCCTCCTG
GTTGGGTCATGCAGTTACCCTGTTTTCTAGGACAAAAGTTCTCAGTCACTGTGCAATATG
GCCTCTTGGGTCCCAGGAGGGTCTGGAGGAGAACTGGCTCTTACAACCTTCTGGTGCCTT
GGCAGGCTTAGGGAACCATCTCTCCCTCTGTCCTTGGGACTATGGCTGGATCCTCAGCCT
TGCAGTATTCCTTGGCCGAATGGGAGAATGCCCCAAGTTCTGCAGGACTACTTGGTATTT
TTGTAGGGCTGACACTAAAAGCCAAACCTTGGGCATTGTTTTTTTCTTCCCCGTGCTCAG
AGCACCTGTGGGAGATGTTGCCGTCTCTCAGTACAATCCAAATTTGTCTGTAGACTTGTG
CAATATTTACTGTTTTGGGTTGCAGAAAAATGCAAAACTACACTGGGAAGAAATCCTCTT
CCTTCAGGTTTTCAGTGGTATTAGTGAGGGGTCCTCAGAAGGCCTTGAGTATCGCAAACC
CAAGACCATCTCAAGAAGGATGGAGCTAGAACATCTGGTCAACCTGGCTACCCTCCTGCC
ATTGCCCCTTGTGGAGAAAACTTCCTCCCCACTGCCAGTCCCCTTTCCTGGATTTCTTAA
CTACTCAGTTCTGATTCAAAGGTGCTATTTACCAAACACTTTCCCTACCCATTCCTGCCA
GTTCTGCCTCTTCAACGTTCCAGATCCCCAGCTACCATCCCAGCCCCTGTTTCCAGTCTT
TATTGCTTTAAAGGTAACTTTGGGCCCACAGACCCAAGAGCTAATTTTCTGGCCTGTGGG
TTGAAACAAAGCTGTGAATCACTGCAGATTATGTTGTTGCATCTTGTTGGCAAACAGGCC
CCTGCCTTTTTATAAGCAGCCTCATAGTCTCATGCTTAATCTTTTCTCTCTTCTTTTTGA
TGTTCACTTTAAAATCAACAAAACACCCAGAGCTGGACTGTTGAGCAGGCCTGTCTCTCC
TATTAAGTAAAAATAAATAATAGTAGTTTGTAAGCTATTCTGATAGAAAAGACAAAGGTT
ACTAATTGTATAATAGTGTTTTATATGGAAGAATGTACAGGTTTATGGACAAATGTACAC
CTTTTTTTGTTACTTTAATAAAAATCTAGCAGATGAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               299-494, - strand, RNAz p=0.845687
               

               
               604-723, + strand, RNAz p=0.66929

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               299-494, - strand, RNAz p=0.845687
               

               
               604-723, + strand, RNAz p=0.66929

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               300-369, + strand, RNAmicro p=0.995512

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               300-369, + strand, RNAmicro p=0.995512

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_006763, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_006763, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               220-1357, gnl|bosTau2|chr16 (2465300-2466414)
               

               
               220-1357, gnl|Hg17|chr1 (200009216-200010387)
               

               
               220-1357, gnl|Mm7|chr1 (133966177-133965116)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               220-1357, gnl|bosTau2|chr16 (2465300-2466414)
               

               
               220-1357, gnl|Hg17|chr1 (200009216-200010387)
               

               
               220-1357, gnl|Mm7|chr1 (133966177-133965116)

Expressed library(ies): 30 entry(ies)

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Expressed library(ies): 30 entry(ies)

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               cov (0.792917)
               

               
               fty (0.703359)
               

               
               thg (0.633955)
               

               
               ssp (0.406559)
               

               
               pla (0.401016)
               

               
               sin (0.349895)
               

               
               med (0.348756)
               

               
               isp (0.300752)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               lyg (0.266205)
               

               
               bla (0.248694)
               

               
               cly (0.241284)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               ese (0.126502)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.792917)
               

               
               fty (0.703359)
               

               
               thg (0.633955)
               

               
               ssp (0.406559)
               

               
               pla (0.401016)
               

               
               sin (0.349895)
               

               
               med (0.348756)
               

               
               isp (0.300752)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               lyg (0.266205)
               

               
               bla (0.248694)
               

               
               cly (0.241284)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               ese (0.126502)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)

	299-494, - strand, RNAz p=0.845687
	604-723, + strand, RNAz p=0.66929

	220-1357, gnl\|bosTau2\|chr16 (2465300-2466414)
	220-1357, gnl\|Hg17\|chr1 (200009216-200010387)
	220-1357, gnl\|Mm7\|chr1 (133966177-133965116)

	cov (0.792917)
	fty (0.703359)
	thg (0.633955)
	ssp (0.406559)
	pla (0.401016)
	sin (0.349895)
	med (0.348756)
	isp (0.300752)
	cga (0.279096)
	fce (0.271592)
	lyg (0.266205)
	bla (0.248694)
	cly (0.241284)
	ldo (0.194005)
	cmu (0.186393)
	sag (0.182715)
	gul (0.177588)
	csp (0.161186)
	mga (0.160205)
	cli (0.152812)
	eli (0.151814)
	cag (0.151194)
	bfe (0.149858)
	liv (0.146284)
	spl (0.143184)
	pty (0.142714)
	ste (0.135208)
	ese (0.126502)
	cbl (0.114797)
	eje (0.0988338)