Non-Coding RNA Search

Ss1.1-Pig4-TMW8034J08.3

Sequence:


               
               GAAGCGGTCCCCCAACGACTTCGCCCTCTGGAAGGCGTCCAAGCCGGGGGAGCCATCCTG
GCCGTGCCCCTGGGGAAGGGGGCGTCCGGGATGGCACATTGAGTGCTCAGCCATGGCGGG
CACCCTCCTGGGAGCCTCGATGGACATCCACGGAGGGGGCTTCGACCTCCGCTTCCCCCA
CCACGACAACGAGCTGGCGCAGTCGGAGGCCTACTTTGAAAACGACTGCTGGGTCAGGTA
CTTCCTGCACACGGGCCACCTGACCATCGCGGGCTGCAAGATGTCCAAGTCGCTCAAAAA
CTTCATCACCATCAAAGACGCCCTGAAGAAGCACTCGGCGCGGCAGCTGCGCCTGGCCTT
CCTCATGCACGCGTGGAAGGACACGCTGGATTACTCGAGCAACACCATGGAGTCGGCGCT
GCAGTACGAGCGGTTCCTGAACGAGTTTTTCTTAAATGTGAAAGACCTCCTGCGAGCACC
CGGGGATGTCACCGGCCAGTTTGAGAAGTGGGAGCGGGAGGAGACCGAGCTGAACAAGTG
CTTTTATGACAAGAAGGCCGCGGTTCATGAAGCGCTCTGTGATAACGTGGACACGCGCAC
CGCCTTGGAGGAGATGCGGGCTCTGGTCAGCCAGTGCAACCTCTACACGGCGGCCCGGAA
GGCCGCGAGAAGGAGGCCCAACCGGGCCCTGCTGGCGAGTGTCGCCAACTACCTCACCCA
CATGCTGAAGATTTTTGGGGCCATAGAAGAGGAGAGCCCCCTGGGCTTCCCCGTCGGAGC
ACCTGGGACCAGCCTCAGCCTCGAGTCCACGGTCATGCCGTACCTCCAGGTGCTGTCGGA
GTTCCGGGAAGGAGTGCGAAGCATCGCCCGGGAACACAGAGTCCCCGAGGTCCTGCAGCT
CAGTGACGCCCTGCGGGACGACATCCTGCCTGAGCTGGGGGTGCGGCTGGAGGACCACGA
AGGACTGCCCACTGTGGTCAAGCTGGTGGACAGAGACACCTTACTGCGGGAGCGAGAAGA
GAAGAAAAGGGTTGAGGAGGAGAAGAGGAGGAAGAAAGAGGAGGCCGCCAGGAAGAGACA
AGAGCAGGAAGCGGCGAAACTGGCCAAGATGAAGGTTCCGCCCGGTGAGATGTTCTTGTC
TGAAAGTGACAAGTATTCCAAGTTCGACGAAAACGGCCTGCCCACACACGACGCGGAGGG
CAAAGAGCTCAGCAAAGGGCAGGCCAAGAAGCTGAAGAAGCTCTTCGAGGCGCAGGAGAA
GCTGCACAAGGAGTACCTGCAGCTGGTTCAGAACGGGGGCTTCCCGTGAGGGCGCGAGCT
GCTGCCCGGGCGCCCGTCGTCTTTACGGCTTCCTCGGGGCTGCGTTGAGGATCCTGTGTC
CAGAGAGGTCCGGGCCACCTTCGGCTCTGAAACGTCAGTAATAAATTCTCCCAAACACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGCGGTCCCCCAACGACTTCGCCCTCTGGAAGGCGTCCAAGCCGGGGGAGCCATCCTG
GCCGTGCCCCTGGGGAAGGGGGCGTCCGGGATGGCACATTGAGTGCTCAGCCATGGCGGG
CACCCTCCTGGGAGCCTCGATGGACATCCACGGAGGGGGCTTCGACCTCCGCTTCCCCCA
CCACGACAACGAGCTGGCGCAGTCGGAGGCCTACTTTGAAAACGACTGCTGGGTCAGGTA
CTTCCTGCACACGGGCCACCTGACCATCGCGGGCTGCAAGATGTCCAAGTCGCTCAAAAA
CTTCATCACCATCAAAGACGCCCTGAAGAAGCACTCGGCGCGGCAGCTGCGCCTGGCCTT
CCTCATGCACGCGTGGAAGGACACGCTGGATTACTCGAGCAACACCATGGAGTCGGCGCT
GCAGTACGAGCGGTTCCTGAACGAGTTTTTCTTAAATGTGAAAGACCTCCTGCGAGCACC
CGGGGATGTCACCGGCCAGTTTGAGAAGTGGGAGCGGGAGGAGACCGAGCTGAACAAGTG
CTTTTATGACAAGAAGGCCGCGGTTCATGAAGCGCTCTGTGATAACGTGGACACGCGCAC
CGCCTTGGAGGAGATGCGGGCTCTGGTCAGCCAGTGCAACCTCTACACGGCGGCCCGGAA
GGCCGCGAGAAGGAGGCCCAACCGGGCCCTGCTGGCGAGTGTCGCCAACTACCTCACCCA
CATGCTGAAGATTTTTGGGGCCATAGAAGAGGAGAGCCCCCTGGGCTTCCCCGTCGGAGC
ACCTGGGACCAGCCTCAGCCTCGAGTCCACGGTCATGCCGTACCTCCAGGTGCTGTCGGA
GTTCCGGGAAGGAGTGCGAAGCATCGCCCGGGAACACAGAGTCCCCGAGGTCCTGCAGCT
CAGTGACGCCCTGCGGGACGACATCCTGCCTGAGCTGGGGGTGCGGCTGGAGGACCACGA
AGGACTGCCCACTGTGGTCAAGCTGGTGGACAGAGACACCTTACTGCGGGAGCGAGAAGA
GAAGAAAAGGGTTGAGGAGGAGAAGAGGAGGAAGAAAGAGGAGGCCGCCAGGAAGAGACA
AGAGCAGGAAGCGGCGAAACTGGCCAAGATGAAGGTTCCGCCCGGTGAGATGTTCTTGTC
TGAAAGTGACAAGTATTCCAAGTTCGACGAAAACGGCCTGCCCACACACGACGCGGAGGG
CAAAGAGCTCAGCAAAGGGCAGGCCAAGAAGCTGAAGAAGCTCTTCGAGGCGCAGGAGAA
GCTGCACAAGGAGTACCTGCAGCTGGTTCAGAACGGGGGCTTCCCGTGAGGGCGCGAGCT
GCTGCCCGGGCGCCCGTCGTCTTTACGGCTTCCTCGGGGCTGCGTTGAGGATCCTGTGTC
CAGAGAGGTCCGGGCCACCTTCGGCTCTGAAACGTCAGTAATAAATTCTCCCAAACACAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q7TNP6_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7TNP6_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               207-336, - strand, RNAz p=0.920304
               

               
               613-730, - strand, RNAz p=0.560315

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               207-336, - strand, RNAz p=0.920304
               

               
               613-730, - strand, RNAz p=0.560315

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               207-336, gnl|bosTau2|chr29 (43842379-43842250)
               

               
               207-336, gnl|Hg17|chr11 (2996557-2996428)
               

               
               207-336, gnl|Mm7|chr7 (139997431-139997302)
               


               
               540-730, gnl|bosTau2|chr29 (43841488-43841298)
               

               
               540-730, gnl|Hg17|chr11 (2995102-2994912)
               

               
               540-730, gnl|Mm7|chr7 (139996403-139996213)
               


               
               1175-1436, gnl|bosTau2|chr29 (43831583-43831323)
               

               
               1175-1436, gnl|Hg17|chr11 (2979054-2978740)
               

               
               1175-1436, gnl|Mm7|chr7 (139985286-139984990)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               207-336, gnl|bosTau2|chr29 (43842379-43842250)
               

               
               207-336, gnl|Hg17|chr11 (2996557-2996428)
               

               
               207-336, gnl|Mm7|chr7 (139997431-139997302)
               


               
               540-730, gnl|bosTau2|chr29 (43841488-43841298)
               

               
               540-730, gnl|Hg17|chr11 (2995102-2994912)
               

               
               540-730, gnl|Mm7|chr7 (139996403-139996213)
               


               
               1175-1436, gnl|bosTau2|chr29 (43831583-43831323)
               

               
               1175-1436, gnl|Hg17|chr11 (2979054-2978740)
               

               
               1175-1436, gnl|Mm7|chr7 (139985286-139984990)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               amn (0.417711)
               

               
               tes (0.207814)
               

               
               nep (0.183925)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               tes (0.207814)
               

               
               nep (0.183925)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

	207-336, - strand, RNAz p=0.920304
	613-730, - strand, RNAz p=0.560315

	207-336, gnl\|bosTau2\|chr29 (43842379-43842250)
	207-336, gnl\|Hg17\|chr11 (2996557-2996428)
	207-336, gnl\|Mm7\|chr7 (139997431-139997302)

	540-730, gnl\|bosTau2\|chr29 (43841488-43841298)
	540-730, gnl\|Hg17\|chr11 (2995102-2994912)
	540-730, gnl\|Mm7\|chr7 (139996403-139996213)

	1175-1436, gnl\|bosTau2\|chr29 (43831583-43831323)
	1175-1436, gnl\|Hg17\|chr11 (2979054-2978740)
	1175-1436, gnl\|Mm7\|chr7 (139985286-139984990)

	amn (0.417711)
	tes (0.207814)
	nep (0.183925)
	pty (0.142714)
	cov (0.132153)
	eru (0.120048)
	jca (0.11396)