Ss1.1-Pig4-TMW8034J10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGTATGAACGGGCCCGGGACATCCAGGAGGCCCTGGAGGCATGCCAGACCCGCATCTCC AAGATGGAGCTGCAGCAGCAGCAGCAGCAGGTGGTACAGCTGGAGGGGCTGGAGAATGCC ACTGCCCGGAACCTTCTGGGCAAACTCATCAACATCCTCCTGGCGGTCATGGCAGTCCTT TTGGTCTTCGTCTCCACAGTCGCCAACTGTGTGGTTCCCCTCATGAAGACTCGCAACAGG ACGTTCAGCACTTTATTCCTTGTGGTTTTCATTGCCTTTCTCTGGAAGCACTGGGATGCC CTCTTCAGCTATGTAGAACGGTTCTTTTCCTCTCCGAGATGATGCTGGCACAAGAAGGCA GTGCTCCCTTACCCTCTGGCGAGTGCATGCAGTGAAGAATTAGACAGCAACTTACCTACT CTGAAGTTTTCTACAACAACAAAAGAGTTGAGTGAATCTGTTTACATTTAGAATAATGTT TTTTTCTTCAAAAGACGCAATTGCAATAGTATTTTTTAGATTTTATCCAAGAAGTTTTTT GGGCAAAAATCTTGGATCATTTTTATGTAGCATGATTTTCCTTGGGATGCAAATCTTAAA CAGTCCTTTAACATGAACCAACAATCTGGAGCACACTGAAGGGCATTCTAAATTGTGGCT TGAAGGACTGCACTAAAACCCACTAAAAAGATGCGAAAACCTGACTAGGGAAACCAGTTA AACCTAACCCCCTGCCTTGTCTGGGCTCACCACCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGTATGAACGGGCCCGGGACATCCAGGAGGCCCTGGAGGCATGCCAGACCCGCATCTCC AAGATGGAGCTGCAGCAGCAGCAGCAGCAGGTGGTACAGCTGGAGGGGCTGGAGAATGCC ACTGCCCGGAACCTTCTGGGCAAACTCATCAACATCCTCCTGGCGGTCATGGCAGTCCTT TTGGTCTTCGTCTCCACAGTCGCCAACTGTGTGGTTCCCCTCATGAAGACTCGCAACAGG ACGTTCAGCACTTTATTCCTTGTGGTTTTCATTGCCTTTCTCTGGAAGCACTGGGATGCC CTCTTCAGCTATGTAGAACGGTTCTTTTCCTCTCCGAGATGATGCTGGCACAAGAAGGCA GTGCTCCCTTACCCTCTGGCGAGTGCATGCAGTGAAGAATTAGACAGCAACTTACCTACT CTGAAGTTTTCTACAACAACAAAAGAGTTGAGTGAATCTGTTTACATTTAGAATAATGTT TTTTTCTTCAAAAGACGCAATTGCAATAGTATTTTTTAGATTTTATCCAAGAAGTTTTTT GGGCAAAAATCTTGGATCATTTTTATGTAGCATGATTTTCCTTGGGATGCAAATCTTAAA CAGTCCTTTAACATGAACCAACAATCTGGAGCACACTGAAGGGCATTCTAAATTGTGGCT TGAAGGACTGCACTAAAACCCACTAAAAAGATGCGAAAACCTGACTAGGGAAACCAGTTA AACCTAACCCCCTGCCTTGTCTGGGCTCACCACCTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 25-122, - strand, RNAz p=0.671979 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 25-122, - strand, RNAz p=0.671979 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 25-303, gnl|bosTau2|chr16 (1133616-1133894) | |
| 25-303, gnl|canFam2|chr38 (4773352-4773637) | |
| 25-303, gnl|danRer3|chrUn (13882673-13882952) | |
| 25-303, gnl|dasNov1|scaffold_252747 (730-444) | |
| 25-303, gnl|echTel1|scaffold_141503 (147-434) | |
| 25-303, gnl|fr1|chrUn (73148389-73148109) | |
| 25-303, gnl|galGal2|chr26 (667986-668269) | |
| 25-303, gnl|hg17|chr1 (201972588-201972874) | |
| 25-303, gnl|Hg17|chr1 (201972595-201972873) | |
| 25-303, gnl|loxAfr1|scaffold_15052 (21478-21764) | |
| 25-303, gnl|mm7|chr1 (132258783-132258497) | |
| 25-303, gnl|Mm7|chr1 (132258774-132258496) | |
| 25-303, gnl|monDom2|scaffold_13 (6846279-6846565) | |
| 25-303, gnl|oryCun1|scaffold_176124 (21659-21382) | |
| 25-303, gnl|panTro1|chr1 (184926667-184926953) | |
| 25-303, gnl|rheMac2|chr1 (165144113-165143827) | |
| 25-303, gnl|rn3|chr13 (45261895-45261604) | |
| 25-303, gnl|tetNig1|chr11 (5902597-5902323) | |
| 25-303, gnl|xenTro1|scaffold_19 (3373692-3373985) | |
| 561-756, gnl|bosTau2|chr8 (41012666-41012864) | |
| 561-756, gnl|Hg17|chr3 (130852805-130852608) | |
| 561-756, gnl|Mm7|chr6 (116047549-116047379) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 25-303, gnl|bosTau2|chr16 (1133616-1133894) | |
| 25-303, gnl|canFam2|chr38 (4773352-4773637) | |
| 25-303, gnl|danRer3|chrUn (13882673-13882952) | |
| 25-303, gnl|dasNov1|scaffold_252747 (730-444) | |
| 25-303, gnl|echTel1|scaffold_141503 (147-434) | |
| 25-303, gnl|fr1|chrUn (73148389-73148109) | |
| 25-303, gnl|galGal2|chr26 (667986-668269) | |
| 25-303, gnl|hg17|chr1 (201972588-201972874) | |
| 25-303, gnl|Hg17|chr1 (201972595-201972873) | |
| 25-303, gnl|loxAfr1|scaffold_15052 (21478-21764) | |
| 25-303, gnl|mm7|chr1 (132258783-132258497) | |
| 25-303, gnl|Mm7|chr1 (132258774-132258496) | |
| 25-303, gnl|monDom2|scaffold_13 (6846279-6846565) | |
| 25-303, gnl|oryCun1|scaffold_176124 (21659-21382) | |
| 25-303, gnl|panTro1|chr1 (184926667-184926953) | |
| 25-303, gnl|rheMac2|chr1 (165144113-165143827) | |
| 25-303, gnl|rn3|chr13 (45261895-45261604) | |
| 25-303, gnl|tetNig1|chr11 (5902597-5902323) | |
| 25-303, gnl|xenTro1|scaffold_19 (3373692-3373985) | |
| 561-756, gnl|bosTau2|chr8 (41012666-41012864) | |
| 561-756, gnl|Hg17|chr3 (130852805-130852608) | |
| 561-756, gnl|Mm7|chr6 (116047549-116047379) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| ste (0.540833) | |
| ldo (0.194005) | |
| duo (0.172801) | |
| nco (0.161734) | |
| pla (0.133672) | |
| bla (0.124347) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ste (0.540833) | |
| ldo (0.194005) | |
| duo (0.172801) | |
| nco (0.161734) | |
| pla (0.133672) | |
| bla (0.124347) |