Ss1.1-Pig4-TMW8034J18.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGACGAGCTCCCGGATGTGGAGAAGCTGGGGAGAAGGCGTGGGAGGAAGATGGACTCAGT GGAGAAGGGGGCCGCCACCTCTGTCTCCAACCCACGGGGGCGGCCCTCCCGGGGCCGGCC GCCGAAGCTGCAACGCAACTCCCGCGGCGGCCAGGGCCGAGGGGTAGAGAAGCCCCCGCA CCTGGCGGCCCTGATCCTGGCCCGGGGCGGCAGCAAGGGCATCCCCCTGAAGAACATTAA GCACCTGGCGGGGGTCCCACTCATTGGCTGGGTCCTGCGTGCGGCCCTGGATTCGGGGGT CTTCCAGAGTGTGTGGGTTTCAACAGACCATGATGAAATTGAGAATGTGGCCAAACAATT TGGTGCACAAGTTCATCGAAGAAGTTCTGAAGCTTCAAAAGACAGTTCTACCTCACTAGA TGCCATCATAGAATTTCTTAATTATCACAATGAGGTTGACATTATAGGAAATATTCAAGC CACTTCCCCGTGTTTACATCCTACCGATCTTCAAAAAGTTGCAGAAATGATTCGAGAAGA AGGATATGATTCTGTTTTCTCTGTTGTGAGACGCCATCAGTTTCGGTGGGGTGAAATTCA GAAAGGAGTTCGTGAAATGACTGAGCCTCTGAATTTGAATCCAGCTAAACGACCTCGTCG GCAAGACTGGGATGGAGAATTGTATGAAAATGGCTCATTTTATTTTGCTAAAAGACATTT GATAGAGATGGGTTACTTACAGGGTGGGAAAATGGCCTACTATGAAATGCGAGCTGAGCA CAGTGTGGACATAGATGTGGACATTGACTGGCCTATTGCAGAACAAAGAGTATTAAGATT TGGCTATTTTGGCAAAGAGAAGCTAAAGGAGATAAAACTTTTTGTTTGCAATATTGATGG ATGTTTCACCAATGGCCACATTTATGTATCAGGAGACCAAAAAGAAATAATATCTTATGA TGTAAAAGATGCTATTGGGATAAGTTTATTAAAGAAAAGTGGTATTGAGGTGAGGTTGAT CTCAGAAAGGGCCTGTTCAAAGCAGACTCTTTCTTCCTTAAAACTGGATTGCAAAATGGA AGTCAACGTACCAGACAAGCTTGCAGTTGTAGATGAATGGAGAAAAGAAATGGGCCTGTG CTGGAAAGAAGTGGCATATCTTGGAAATGAAGTGTCTGACGAGGAGTGCCTGAAGAAAGT GGGCCTTAGTGGTGTTCCTGCTGATGCCTGTGCCGCTGCCCAGAAGGCTGTTGGATATAT TTGCAAGTGCAATGGTGGCCGTGGTGCCCTCCGAGAGTTTGCAGAGCACATTTTCCTACT AATGGAAAAGGTCGTTAATTCATGCCAAAAATAGAGATTAGAATAATGTTGGAAATGAAA GTATACAGCCTTCTTCAGCCACTTTTATTTTTGATCAAGTCCAACTCCATGCTGTAATGT CACAGACAGTGTGATTTGATTTGTGATATATCTTAATATCTTTTAAAGCAAAGTCTTCTC AAAACTGTCACTCCAAAACCTTCTATGAAATAACCGTGCTCTACTTTTCTCTTTATGCAG GATAATGAGAGATTGATTGCAGTCTTTCTCAAATTTTTAGTAAATGCAAGCAAGAACTTC ATCAAAATTGACTTTGTATTGTACACTGTAAAATTGTGTGTTTGTGTGCTTTTAATGATG CTGAAACTTTATTTATTTGGGGACAGTTTGTCTGGTAAGACATGCCCTTCTATTAATTAA TAAAATTACATTTCACAAACTTGATGAAAACTGCCTTGTTGGCTCTAGAAGAGATTTTAC CAAACATTGCCTGATTTCCTTTAAATACTGGACGTGCAGTCAGGTGAGAAACAAGTCACT AAATACCAATTGTAGAACATCTGATTGTACTTCGTATATGGATACATATAGCACATAAAT ACAAATACAGTTGCCTGAAGAAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGACGAGCTCCCGGATGTGGAGAAGCTGGGGAGAAGGCGTGGGAGGAAGATGGACTCAGT GGAGAAGGGGGCCGCCACCTCTGTCTCCAACCCACGGGGGCGGCCCTCCCGGGGCCGGCC GCCGAAGCTGCAACGCAACTCCCGCGGCGGCCAGGGCCGAGGGGTAGAGAAGCCCCCGCA CCTGGCGGCCCTGATCCTGGCCCGGGGCGGCAGCAAGGGCATCCCCCTGAAGAACATTAA GCACCTGGCGGGGGTCCCACTCATTGGCTGGGTCCTGCGTGCGGCCCTGGATTCGGGGGT CTTCCAGAGTGTGTGGGTTTCAACAGACCATGATGAAATTGAGAATGTGGCCAAACAATT TGGTGCACAAGTTCATCGAAGAAGTTCTGAAGCTTCAAAAGACAGTTCTACCTCACTAGA TGCCATCATAGAATTTCTTAATTATCACAATGAGGTTGACATTATAGGAAATATTCAAGC CACTTCCCCGTGTTTACATCCTACCGATCTTCAAAAAGTTGCAGAAATGATTCGAGAAGA AGGATATGATTCTGTTTTCTCTGTTGTGAGACGCCATCAGTTTCGGTGGGGTGAAATTCA GAAAGGAGTTCGTGAAATGACTGAGCCTCTGAATTTGAATCCAGCTAAACGACCTCGTCG GCAAGACTGGGATGGAGAATTGTATGAAAATGGCTCATTTTATTTTGCTAAAAGACATTT GATAGAGATGGGTTACTTACAGGGTGGGAAAATGGCCTACTATGAAATGCGAGCTGAGCA CAGTGTGGACATAGATGTGGACATTGACTGGCCTATTGCAGAACAAAGAGTATTAAGATT TGGCTATTTTGGCAAAGAGAAGCTAAAGGAGATAAAACTTTTTGTTTGCAATATTGATGG ATGTTTCACCAATGGCCACATTTATGTATCAGGAGACCAAAAAGAAATAATATCTTATGA TGTAAAAGATGCTATTGGGATAAGTTTATTAAAGAAAAGTGGTATTGAGGTGAGGTTGAT CTCAGAAAGGGCCTGTTCAAAGCAGACTCTTTCTTCCTTAAAACTGGATTGCAAAATGGA AGTCAACGTACCAGACAAGCTTGCAGTTGTAGATGAATGGAGAAAAGAAATGGGCCTGTG CTGGAAAGAAGTGGCATATCTTGGAAATGAAGTGTCTGACGAGGAGTGCCTGAAGAAAGT GGGCCTTAGTGGTGTTCCTGCTGATGCCTGTGCCGCTGCCCAGAAGGCTGTTGGATATAT TTGCAAGTGCAATGGTGGCCGTGGTGCCCTCCGAGAGTTTGCAGAGCACATTTTCCTACT AATGGAAAAGGTCGTTAATTCATGCCAAAAATAGAGATTAGAATAATGTTGGAAATGAAA GTATACAGCCTTCTTCAGCCACTTTTATTTTTGATCAAGTCCAACTCCATGCTGTAATGT CACAGACAGTGTGATTTGATTTGTGATATATCTTAATATCTTTTAAAGCAAAGTCTTCTC AAAACTGTCACTCCAAAACCTTCTATGAAATAACCGTGCTCTACTTTTCTCTTTATGCAG GATAATGAGAGATTGATTGCAGTCTTTCTCAAATTTTTAGTAAATGCAAGCAAGAACTTC ATCAAAATTGACTTTGTATTGTACACTGTAAAATTGTGTGTTTGTGTGCTTTTAATGATG CTGAAACTTTATTTATTTGGGGACAGTTTGTCTGGTAAGACATGCCCTTCTATTAATTAA TAAAATTACATTTCACAAACTTGATGAAAACTGCCTTGTTGGCTCTAGAAGAGATTTTAC CAAACATTGCCTGATTTCCTTTAAATACTGGACGTGCAGTCAGGTGAGAAACAAGTCACT AAATACCAATTGTAGAACATCTGATTGTACTTCGTATATGGATACATATAGCACATAAAT ACAAATACAGTTGCCTGAAGAAAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 892-1011, + strand, RNAz p=0.545435 | |
| 1242-1361, + strand, RNAz p=0.800974 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 892-1011, + strand, RNAz p=0.545435 | |
| 1242-1361, + strand, RNAz p=0.800974 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC016609, + |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 5-309, gnl|bosTau2|chr5 (53682045-53682349) | |
| 5-309, gnl|Hg17|chr12 (22090460-22090764) | |
| 5-309, gnl|Mm7|chr6 (142844712-142845009) | |
| 452-608, gnl|bosTau2|chr5 (53689636-53689792) | |
| 452-608, gnl|canFam2|chr27 (28128830-28128633) | |
| 452-608, gnl|danRer3|chr4 (17397849-17397674) | |
| 452-608, gnl|dasNov1|scaffold_10757 (50514-50311) | |
| 452-608, gnl|echTel1|scaffold_315167 (81097-80904) | |
| 452-608, gnl|fr1|chrUn (269187895-269187697) | |
| 452-608, gnl|galGal2|chr1 (63452721-63452497) | |
| 452-608, gnl|hg17|chr12 (22099612-22099816) | |
| 452-608, gnl|Hg17|chr12 (22099655-22099811) | |
| 452-608, gnl|loxAfr1|scaffold_65593 (6409-6212) | |
| 452-608, gnl|mm7|chr6 (142855957-142856152) | |
| 452-608, gnl|Mm7|chr6 (142855991-142856147) | |
| 452-608, gnl|monDom2|scaffold_31 (3939526-3939309) | |
| 452-608, gnl|oryCun1|scaffold_206049 (48386-48587) | |
| 452-608, gnl|panTro1|chrUn_random (48489046-48489250) | |
| 452-608, gnl|rheMac2|chr11 (22399516-22399723) | |
| 452-608, gnl|rn3|chr4 (180903631-180903824) | |
| 452-608, gnl|tetNig1|chrUn_random (161729293-161729102) | |
| 833-1011, gnl|bosTau2|chr5 (53694491-53694669) | |
| 833-1011, gnl|canFam2|chr27 (28121488-28121365) | |
| 833-1011, gnl|danRer3|chr4 (17393855-17393732) | |
| 833-1011, gnl|echTel1|scaffold_299260 (5100-5223) | |
| 833-1011, gnl|fr1|chrUn (269187094-269186971) | |
| 833-1011, gnl|galGal2|chr1 (63449104-63448977) | |
| 833-1011, gnl|hg17|chr12 (22105474-22105597) | |
| 833-1011, gnl|Hg17|chr12 (22105477-22105655) | |
| 833-1011, gnl|loxAfr1|scaffold_65593 (2087-1964) | |
| 833-1011, gnl|mm7|chr6 (142862594-142862717) | |
| 833-1011, gnl|Mm7|chr6 (142862597-142862775) | |
| 833-1011, gnl|monDom2|scaffold_31 (3932047-3931924) | |
| 833-1011, gnl|oryCun1|scaffold_206049 (53787-53910) | |
| 833-1011, gnl|panTro1|chrUn_random (48494877-48495000) | |
| 833-1011, gnl|rheMac2|chr11 (22405281-22405404) | |
| 833-1011, gnl|rn3|chr4 (180909814-180909937) | |
| 1163-1944, gnl|bosTau2|chr5 (53697016-53697792) | |
| 1163-1944, gnl|Hg17|chr12 (22109321-22110260) | |
| 1163-1944, gnl|Mm7|chr6 (142866612-142867323) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-309, gnl|bosTau2|chr5 (53682045-53682349) | |
| 5-309, gnl|Hg17|chr12 (22090460-22090764) | |
| 5-309, gnl|Mm7|chr6 (142844712-142845009) | |
| 452-608, gnl|bosTau2|chr5 (53689636-53689792) | |
| 452-608, gnl|canFam2|chr27 (28128830-28128633) | |
| 452-608, gnl|danRer3|chr4 (17397849-17397674) | |
| 452-608, gnl|dasNov1|scaffold_10757 (50514-50311) | |
| 452-608, gnl|echTel1|scaffold_315167 (81097-80904) | |
| 452-608, gnl|fr1|chrUn (269187895-269187697) | |
| 452-608, gnl|galGal2|chr1 (63452721-63452497) | |
| 452-608, gnl|hg17|chr12 (22099612-22099816) | |
| 452-608, gnl|Hg17|chr12 (22099655-22099811) | |
| 452-608, gnl|loxAfr1|scaffold_65593 (6409-6212) | |
| 452-608, gnl|mm7|chr6 (142855957-142856152) | |
| 452-608, gnl|Mm7|chr6 (142855991-142856147) | |
| 452-608, gnl|monDom2|scaffold_31 (3939526-3939309) | |
| 452-608, gnl|oryCun1|scaffold_206049 (48386-48587) | |
| 452-608, gnl|panTro1|chrUn_random (48489046-48489250) | |
| 452-608, gnl|rheMac2|chr11 (22399516-22399723) | |
| 452-608, gnl|rn3|chr4 (180903631-180903824) | |
| 452-608, gnl|tetNig1|chrUn_random (161729293-161729102) | |
| 833-1011, gnl|bosTau2|chr5 (53694491-53694669) | |
| 833-1011, gnl|canFam2|chr27 (28121488-28121365) | |
| 833-1011, gnl|danRer3|chr4 (17393855-17393732) | |
| 833-1011, gnl|echTel1|scaffold_299260 (5100-5223) | |
| 833-1011, gnl|fr1|chrUn (269187094-269186971) | |
| 833-1011, gnl|galGal2|chr1 (63449104-63448977) | |
| 833-1011, gnl|hg17|chr12 (22105474-22105597) | |
| 833-1011, gnl|Hg17|chr12 (22105477-22105655) | |
| 833-1011, gnl|loxAfr1|scaffold_65593 (2087-1964) | |
| 833-1011, gnl|mm7|chr6 (142862594-142862717) | |
| 833-1011, gnl|Mm7|chr6 (142862597-142862775) | |
| 833-1011, gnl|monDom2|scaffold_31 (3932047-3931924) | |
| 833-1011, gnl|oryCun1|scaffold_206049 (53787-53910) | |
| 833-1011, gnl|panTro1|chrUn_random (48494877-48495000) | |
| 833-1011, gnl|rheMac2|chr11 (22405281-22405404) | |
| 833-1011, gnl|rn3|chr4 (180909814-180909937) | |
| 1163-1944, gnl|bosTau2|chr5 (53697016-53697792) | |
| 1163-1944, gnl|Hg17|chr12 (22109321-22110260) | |
| 1163-1944, gnl|Mm7|chr6 (142866612-142867323) |
| Expressed library(ies): 41 entry(ies) | More info |
| Expressed library(ies): 41 entry(ies) | Help | Less info |
| tra (0.61546) | |
| cbl (0.573987) | |
| fco (0.471624) | |
| bfe (0.449573) | |
| fat (0.442282) | |
| nmm (0.398406) | |
| sin (0.349895) | |
| vin (0.332557) | |
| sme (0.305437) | |
| eli (0.303628) | |
| lun (0.300978) | |
| cte (0.29274) | |
| liv (0.292569) | |
| lin (0.291206) | |
| ste (0.270416) | |
| ova (0.258264) | |
| ret (0.257467) | |
| sug (0.254582) | |
| thg (0.253582) | |
| bla (0.248694) | |
| clu (0.239292) | |
| pgl (0.236967) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| fcc (0.197785) | |
| cmu (0.186393) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| isp (0.150376) | |
| spl (0.143184) | |
| csk (0.140746) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 41 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tra (0.61546) | |
| cbl (0.573987) | |
| fco (0.471624) | |
| bfe (0.449573) | |
| fat (0.442282) | |
| nmm (0.398406) | |
| sin (0.349895) | |
| vin (0.332557) | |
| sme (0.305437) | |
| eli (0.303628) | |
| lun (0.300978) | |
| cte (0.29274) | |
| liv (0.292569) | |
| lin (0.291206) | |
| ste (0.270416) | |
| ova (0.258264) | |
| ret (0.257467) | |
| sug (0.254582) | |
| thg (0.253582) | |
| bla (0.248694) | |
| clu (0.239292) | |
| pgl (0.236967) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| fcc (0.197785) | |
| cmu (0.186393) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| isp (0.150376) | |
| spl (0.143184) | |
| csk (0.140746) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| eje (0.0988338) |