Non-Coding RNA Search

Ss1.1-Pig4-TMW8034J21.3

Sequence:


               
               ATGGAAACTTGTTATCTTACACACAAGCACTGATGCTAAAGAAAAGGATTGTCGTCTATC
ACCCCAAAATAGAAGCTGTCCAGGAGTTTACCAGGACTCTCCCTGCCCTGGTGTGGCATC
GACAGGACTGGACCATCCTTCACTCCTATGTGCACCTGGACGCCGATGAGCTGGAAGCCC
TGCAGATGTGTCCAGGTTACGTCGCTGGCTTTGTCGACTTGGAGGTGAGCAATAGATCAG
ACCTGTACGATGTGTTTGTGAATCTGGCAGATAGTGAGATTACCATTGCTCCGCTCGCAA
AAGAGGCCATGACAATGGGCAAACTGCATAAAGAAATCGGTCAGTTAATTGTCCAGTCGG
CAGAAGATCCAGAGAAATCAGACAGCCAAGTTATACAGGATATTTCCCTAAAAACAAAAG
AAATCTTCACCAACTTGGCTCCATTTTCAGAAGTTTCAGATGATGGAGAAAAACGAGTGC
TCAATTACGAGGCCCTAAAGCAAAGGCGATTTCCACCAGCAACAGAAAACTTCCTGTACC
ATCTAGCAGCCGCGGAACAAATGCTGAAAATCTAATCACGGGACCGAATGTGTCACTGAT
GACTGGTCTCAAGCCCCAGCACCATGACTATCCATTAACTATGTAAAATACTGGAAATAA
CAAAGCAAATGTTATATTTTTTAATGATTTATTTGAAAGCATTGCGATTTGACCTGGGAA
AGCACTGAAAACACGTCTGATCTCCTCCTGTCTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGAAACTTGTTATCTTACACACAAGCACTGATGCTAAAGAAAAGGATTGTCGTCTATC
ACCCCAAAATAGAAGCTGTCCAGGAGTTTACCAGGACTCTCCCTGCCCTGGTGTGGCATC
GACAGGACTGGACCATCCTTCACTCCTATGTGCACCTGGACGCCGATGAGCTGGAAGCCC
TGCAGATGTGTCCAGGTTACGTCGCTGGCTTTGTCGACTTGGAGGTGAGCAATAGATCAG
ACCTGTACGATGTGTTTGTGAATCTGGCAGATAGTGAGATTACCATTGCTCCGCTCGCAA
AAGAGGCCATGACAATGGGCAAACTGCATAAAGAAATCGGTCAGTTAATTGTCCAGTCGG
CAGAAGATCCAGAGAAATCAGACAGCCAAGTTATACAGGATATTTCCCTAAAAACAAAAG
AAATCTTCACCAACTTGGCTCCATTTTCAGAAGTTTCAGATGATGGAGAAAAACGAGTGC
TCAATTACGAGGCCCTAAAGCAAAGGCGATTTCCACCAGCAACAGAAAACTTCCTGTACC
ATCTAGCAGCCGCGGAACAAATGCTGAAAATCTAATCACGGGACCGAATGTGTCACTGAT
GACTGGTCTCAAGCCCCAGCACCATGACTATCCATTAACTATGTAAAATACTGGAAATAA
CAAAGCAAATGTTATATTTTTTAATGATTTATTTGAAAGCATTGCGATTTGACCTGGGAA
AGCACTGAAAACACGTCTGATCTCCTCCTGTCTGAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57107329|ref|XP_535029.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57107329|ref|XP_535029.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               193-303, gnl|bosTau2|chr26 (26066780-26066670)
               

               
               193-303, gnl|Hg17|chr10 (120879014-120879124)
               

               
               193-303, gnl|Mm7|chr19 (60753492-60753602)
               


               
               394-734, gnl|bosTau2|chr26 (26063089-26062749)
               

               
               394-734, gnl|Hg17|chr10 (120885968-120886309)
               

               
               394-734, gnl|Mm7|chr19 (60757529-60757852)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               193-303, gnl|bosTau2|chr26 (26066780-26066670)
               

               
               193-303, gnl|Hg17|chr10 (120879014-120879124)
               

               
               193-303, gnl|Mm7|chr19 (60753492-60753602)
               


               
               394-734, gnl|bosTau2|chr26 (26063089-26062749)
               

               
               394-734, gnl|Hg17|chr10 (120885968-120886309)
               

               
               394-734, gnl|Mm7|chr19 (60757529-60757852)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               aor (0.195274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)

	193-303, gnl\|bosTau2\|chr26 (26066780-26066670)
	193-303, gnl\|Hg17\|chr10 (120879014-120879124)
	193-303, gnl\|Mm7\|chr19 (60753492-60753602)

	394-734, gnl\|bosTau2\|chr26 (26063089-26062749)
	394-734, gnl\|Hg17\|chr10 (120885968-120886309)
	394-734, gnl\|Mm7\|chr19 (60757529-60757852)