Ss1.1-Pig4-TMW8034J21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGATGGCTGCTACTGAGGCTACGAGTCGGGCTGAGATGCTCGGAGTCGGGCTGATCGA AAAGGACACAAATGGAGAAGTTCTGTGGGTGTGGTGTTATCCTTCCACGACAGCTACTTT AAGGAATCTGCTGCTGCGAAAATGCTGCCTTACAGATGAAAACAGACTTCTCCATCCCTT TGTCTATGGTCAGTACAGAAGAACCTGGTTTTATATCACAACAGTGGAAGTGCCAGATGC TTCCGTTTTGAAAAAGGTGACTCATTTTTCTATTGTTCTGACCGCCAAAGATTTTAATCC AGAGAAATATGCCGCCTTCACTAGGATATTGTGTAGAATGTACCTGAAACACGGGAGCCC AGTTAAAATGATGGAGAGTTACATCGCTGTTCTCACGAAGGGGATTTGCCAAAGTGAAGA AAATGGCTCTTTCCTTAGCAAGGACTTTGATGCCCGAAAAGCATACCTTGCAGGCTCCAT CAAAGACATTGTATCTCAGTTTGGAATGGAAACTGTTATCTTACACACAGCACTGATGCT AAAGAAAAGGATTGTCGTCTATCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGATGGCTGCTACTGAGGCTACGAGTCGGGCTGAGATGCTCGGAGTCGGGCTGATCGA AAAGGACACAAATGGAGAAGTTCTGTGGGTGTGGTGTTATCCTTCCACGACAGCTACTTT AAGGAATCTGCTGCTGCGAAAATGCTGCCTTACAGATGAAAACAGACTTCTCCATCCCTT TGTCTATGGTCAGTACAGAAGAACCTGGTTTTATATCACAACAGTGGAAGTGCCAGATGC TTCCGTTTTGAAAAAGGTGACTCATTTTTCTATTGTTCTGACCGCCAAAGATTTTAATCC AGAGAAATATGCCGCCTTCACTAGGATATTGTGTAGAATGTACCTGAAACACGGGAGCCC AGTTAAAATGATGGAGAGTTACATCGCTGTTCTCACGAAGGGGATTTGCCAAAGTGAAGA AAATGGCTCTTTCCTTAGCAAGGACTTTGATGCCCGAAAAGCATACCTTGCAGGCTCCAT CAAAGACATTGTATCTCAGTTTGGAATGGAAACTGTTATCTTACACACAGCACTGATGCT AAAGAAAAGGATTGTCGTCTATCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 368-485, + strand, RNAz p=0.993185 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 368-485, + strand, RNAz p=0.993185 |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 59-258, gnl|bosTau2|chr26 (26076699-26076500) | |
| 59-258, gnl|canFam2|chr28 (32349031-32349256) | |
| 59-258, gnl|canFam2|chr28 (32349050-32349245) | |
| 59-258, gnl|danRer3|chr13 (9555788-9556010) | |
| 59-258, gnl|danRer3|chr13 (9555807-9556002) | |
| 59-258, gnl|dasNov1|scaffold_8330 (73017-73242) | |
| 59-258, gnl|dasNov1|scaffold_8330 (73036-73231) | |
| 59-258, gnl|echTel1|scaffold_175981 (1829-2054) | |
| 59-258, gnl|echTel1|scaffold_310111 (74914-74715) | |
| 59-258, gnl|fr1|chrUn (184917265-184917483) | |
| 59-258, gnl|fr1|chrUn (184917283-184917478) | |
| 59-258, gnl|galGal2|chr6 (29029550-29029775) | |
| 59-258, gnl|galGal2|chr6 (29029569-29029764) | |
| 59-258, gnl|hg17|chr10 (120857451-120857676) | |
| 59-258, gnl|Hg17|chr10 (120857469-120857668) | |
| 59-258, gnl|hg17|chrX (129354723-129354918) | |
| 59-258, gnl|loxAfr1|scaffold_502 (104746-104521) | |
| 59-258, gnl|loxAfr1|scaffold_502 (104727-104532) | |
| 59-258, gnl|mm7|chr19 (60737301-60737526) | |
| 59-258, gnl|mm7|chr19 (60737320-60737515) | |
| 59-258, gnl|Mm7|chr19 (60737319-60737518) | |
| 59-258, gnl|monDom2|scaffold_14 (41288460-41288235) | |
| 59-258, gnl|monDom2|scaffold_14 (41288441-41288246) | |
| 59-258, gnl|oryCun1|scaffold_174814 (40715-40940) | |
| 59-258, gnl|oryCun1|scaffold_174814 (40734-40927) | |
| 59-258, gnl|panTro1|chr8_random (7908949-7908724) | |
| 59-258, gnl|panTro1|chr8_random (7908930-7908735) | |
| 59-258, gnl|rheMac2|chr1 (127467925-127468122) | |
| 59-258, gnl|rheMac2|chr1 (127467924-127468118) | |
| 59-258, gnl|rn3|chr1 (267631473-267631698) | |
| 59-258, gnl|rn3|chr1 (267631492-267631687) | |
| 59-258, gnl|tetNig1|chrUn_random (95875239-95875452) | |
| 59-258, gnl|tetNig1|chrUn_random (95875252-95875447) | |
| 335-485, gnl|bosTau2|chr26 (26072150-26072000) | |
| 335-485, gnl|canFam2|chr28 (32354792-32355005) | |
| 335-485, gnl|danRer3|chr13 (9558644-9558849) | |
| 335-485, gnl|dasNov1|scaffold_8330 (79376-79587) | |
| 335-485, gnl|echTel1|scaffold_263349 (1013-1211) | |
| 335-485, gnl|fr1|chrUn (184917700-184917892) | |
| 335-485, gnl|galGal2|chr6 (29031505-29031700) | |
| 335-485, gnl|hg17|chr10 (120866973-120867219) | |
| 335-485, gnl|Hg17|chr10 (120867019-120867169) | |
| 335-485, gnl|loxAfr1|scaffold_502 (98601-98386) | |
| 335-485, gnl|mm7|chr19 (60743870-60744073) | |
| 335-485, gnl|Mm7|chr19 (60743913-60744063) | |
| 335-485, gnl|monDom2|scaffold_14 (41284529-41284329) | |
| 335-485, gnl|oryCun1|scaffold_174814 (46501-46730) | |
| 335-485, gnl|panTro1|chr8_random (7902487-7902241) | |
| 335-485, gnl|rheMac2|chr9 (118738957-118739170) | |
| 335-485, gnl|rn3|chr1 (267637706-267637924) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 59-258, gnl|bosTau2|chr26 (26076699-26076500) | |
| 59-258, gnl|canFam2|chr28 (32349031-32349256) | |
| 59-258, gnl|canFam2|chr28 (32349050-32349245) | |
| 59-258, gnl|danRer3|chr13 (9555788-9556010) | |
| 59-258, gnl|danRer3|chr13 (9555807-9556002) | |
| 59-258, gnl|dasNov1|scaffold_8330 (73017-73242) | |
| 59-258, gnl|dasNov1|scaffold_8330 (73036-73231) | |
| 59-258, gnl|echTel1|scaffold_175981 (1829-2054) | |
| 59-258, gnl|echTel1|scaffold_310111 (74914-74715) | |
| 59-258, gnl|fr1|chrUn (184917265-184917483) | |
| 59-258, gnl|fr1|chrUn (184917283-184917478) | |
| 59-258, gnl|galGal2|chr6 (29029550-29029775) | |
| 59-258, gnl|galGal2|chr6 (29029569-29029764) | |
| 59-258, gnl|hg17|chr10 (120857451-120857676) | |
| 59-258, gnl|Hg17|chr10 (120857469-120857668) | |
| 59-258, gnl|hg17|chrX (129354723-129354918) | |
| 59-258, gnl|loxAfr1|scaffold_502 (104746-104521) | |
| 59-258, gnl|loxAfr1|scaffold_502 (104727-104532) | |
| 59-258, gnl|mm7|chr19 (60737301-60737526) | |
| 59-258, gnl|mm7|chr19 (60737320-60737515) | |
| 59-258, gnl|Mm7|chr19 (60737319-60737518) | |
| 59-258, gnl|monDom2|scaffold_14 (41288460-41288235) | |
| 59-258, gnl|monDom2|scaffold_14 (41288441-41288246) | |
| 59-258, gnl|oryCun1|scaffold_174814 (40715-40940) | |
| 59-258, gnl|oryCun1|scaffold_174814 (40734-40927) | |
| 59-258, gnl|panTro1|chr8_random (7908949-7908724) | |
| 59-258, gnl|panTro1|chr8_random (7908930-7908735) | |
| 59-258, gnl|rheMac2|chr1 (127467925-127468122) | |
| 59-258, gnl|rheMac2|chr1 (127467924-127468118) | |
| 59-258, gnl|rn3|chr1 (267631473-267631698) | |
| 59-258, gnl|rn3|chr1 (267631492-267631687) | |
| 59-258, gnl|tetNig1|chrUn_random (95875239-95875452) | |
| 59-258, gnl|tetNig1|chrUn_random (95875252-95875447) | |
| 335-485, gnl|bosTau2|chr26 (26072150-26072000) | |
| 335-485, gnl|canFam2|chr28 (32354792-32355005) | |
| 335-485, gnl|danRer3|chr13 (9558644-9558849) | |
| 335-485, gnl|dasNov1|scaffold_8330 (79376-79587) | |
| 335-485, gnl|echTel1|scaffold_263349 (1013-1211) | |
| 335-485, gnl|fr1|chrUn (184917700-184917892) | |
| 335-485, gnl|galGal2|chr6 (29031505-29031700) | |
| 335-485, gnl|hg17|chr10 (120866973-120867219) | |
| 335-485, gnl|Hg17|chr10 (120867019-120867169) | |
| 335-485, gnl|loxAfr1|scaffold_502 (98601-98386) | |
| 335-485, gnl|mm7|chr19 (60743870-60744073) | |
| 335-485, gnl|Mm7|chr19 (60743913-60744063) | |
| 335-485, gnl|monDom2|scaffold_14 (41284529-41284329) | |
| 335-485, gnl|oryCun1|scaffold_174814 (46501-46730) | |
| 335-485, gnl|panTro1|chr8_random (7902487-7902241) | |
| 335-485, gnl|rheMac2|chr9 (118738957-118739170) | |
| 335-485, gnl|rn3|chr1 (267637706-267637924) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (0.1755) | |
| spl (0.143184) | |
| csk (0.140746) |