Non-Coding RNA Search

Ss1.1-Pig4-TMW8034J24.3

Sequence:


               
               GAAGTTACTCCTTTCCAAAACACAGGCGCCCTCCAGTTGACAGTAAAGCTCCATGGTATG
CCTTGACCCATTCCAACAGTCCCAGTAGTGCATTTAAGGTTTGGGGTTTGTTCTTTCGTT
AATGTTACTTTTGTGTTTGTCGGCTGTCTTTTCATTTCCTGAGCTAAGCAGCATTGGGAG
ATATGGACCAGAGATCCACCCTTTAAGAACCAGTGATGAAAATCAAACTTTCTTACTCCA
CTCTGACATAGTTGGTGGTACAAAGGAGAACTTCAAGAGAGGATGTTGTTTAGCTTGAAC
CTCTGTTGCCAGAGATGCTGAAGATACAGACCTTGGACAGGCCAAAAGTTTTCGTTTTTG
GCTCCCAGCTTAGATGACTAGTTGGTCATTTTGAGAAAAAGCAGATGAACACTCCTTGAT
GGTGGAATGATGAGGCAGCAGGAAACCACTGTAACAGGGATCATGAATGACATGGAGAGA
GGAATCACGAGCAGAAGGTGCAGGGCTTGGAAGAAGTGTGGGCTGTGTTTGGAACTTGAT
GGTTTCTGAAGGGATCAGACCACATCAAGGCTCAAGAGTCATCCATGGGCATTTGGTTTC
AACAAATAAACCTAACATCCTACTTTCGAAACTGCTACTGCAGAGTTCAGTCAAATTGTT
CAAGAATACAAACTGCATCGCACCCGTCAGTTGTCAGTTCTGGGGCATGACTTTAGGGTT
TTGTTTTATTTTGTTTATGCAAGAACATAATGATCACTCATCTGTATGTCCACGTTTGTG
TGTGTCCACATCTTCCTGGTAAACATCGTTTTAATTAGTCACTCATTAGCGTTTTCAATA
GGGCTCTTAAGTCCAGTAGATTACGGGTAGTCAGTTGACGAAGATCTGGTTTACAAGAAC
TAATTAAATGTTTCATTGCATTTTTGTAAGAACATAGAATAATTTTATAAAATGTTTGTA
GTTTATAATTGCCGAAAATAATTTAAAGACACCTTTTTTCTCTGTGTGTGCAAATGTGTG
TTTGTGATCCATTTTTTTAGGACACCTGTTTACTAGCTAGCTTTACAATATGCCAAAAAC
AGATTTTTCCCTGACCCAAGCCGTGGTTCACCCTCTTTTCCCCCCATGCTTTGTGCCCTA
GTTTATAACAAAGGAATGATGATGATTTAAGAAGTAGTTCTGTATCTTCAGTATCTTGGT
CTTCCAGAACCCTCTGGTTGGGAAGGGGATCATCTTTTACTGGTCATTTCCCTTTGGAGT
GTAGCTACTTTAACAGACCGAACGAACCTCATTGGCCAAGGAAACAGCAGAGGTGTTACA
GCCTGGCGGTGCCTGTGGCACCATAAGCATCTGGTTTGGCAGGTTTGGTAGTTGTCCTCT
TATGCAGTGCCTCGAGATGGAAGGACTCCATTGCACATCTAGTGGCTTTCACCGTGACAC
AGCACACAGACTTATCATACAAAAGCTGATAATTCTGGTGCCCGAAAGCCACTGGCTTAC
ATGCCTCATATCATGACTAATGCTTTGTTATTACATGTAAGAGATTCTATTTATTTTTAT
TTAAGGCAGAACACCGAAGATAGTTCTTTTTCAATATAGTACAAATTTGTTGTAATAAAA
ACCATGCACATGCAAGATTTTTTTAAGTTTGACACCATTCCCTCTGGTTCCCAATGGACT
ATTTGCCATGTCTACACAACTCCACAAAATCCCCATCGTTGGAAACATCTGGATGTTTTG
CACTACATGGGAGAAAGGTCCAGAAACAATTTGGGTTTTGTTTGTAACTTTCCATTTGGA
TGTCTGGCGTTGCATAGACACCATCCACAGGTGGAACAGATGCTTGGCAAAAACACCTGT
CTGCTTTCTAAGCCAGTGAGGTTGAGGTGAGAGGTTTGCCAGAGTTTGTCTACCTCTGGG
ACAGAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGTTACTCCTTTCCAAAACACAGGCGCCCTCCAGTTGACAGTAAAGCTCCATGGTATG
CCTTGACCCATTCCAACAGTCCCAGTAGTGCATTTAAGGTTTGGGGTTTGTTCTTTCGTT
AATGTTACTTTTGTGTTTGTCGGCTGTCTTTTCATTTCCTGAGCTAAGCAGCATTGGGAG
ATATGGACCAGAGATCCACCCTTTAAGAACCAGTGATGAAAATCAAACTTTCTTACTCCA
CTCTGACATAGTTGGTGGTACAAAGGAGAACTTCAAGAGAGGATGTTGTTTAGCTTGAAC
CTCTGTTGCCAGAGATGCTGAAGATACAGACCTTGGACAGGCCAAAAGTTTTCGTTTTTG
GCTCCCAGCTTAGATGACTAGTTGGTCATTTTGAGAAAAAGCAGATGAACACTCCTTGAT
GGTGGAATGATGAGGCAGCAGGAAACCACTGTAACAGGGATCATGAATGACATGGAGAGA
GGAATCACGAGCAGAAGGTGCAGGGCTTGGAAGAAGTGTGGGCTGTGTTTGGAACTTGAT
GGTTTCTGAAGGGATCAGACCACATCAAGGCTCAAGAGTCATCCATGGGCATTTGGTTTC
AACAAATAAACCTAACATCCTACTTTCGAAACTGCTACTGCAGAGTTCAGTCAAATTGTT
CAAGAATACAAACTGCATCGCACCCGTCAGTTGTCAGTTCTGGGGCATGACTTTAGGGTT
TTGTTTTATTTTGTTTATGCAAGAACATAATGATCACTCATCTGTATGTCCACGTTTGTG
TGTGTCCACATCTTCCTGGTAAACATCGTTTTAATTAGTCACTCATTAGCGTTTTCAATA
GGGCTCTTAAGTCCAGTAGATTACGGGTAGTCAGTTGACGAAGATCTGGTTTACAAGAAC
TAATTAAATGTTTCATTGCATTTTTGTAAGAACATAGAATAATTTTATAAAATGTTTGTA
GTTTATAATTGCCGAAAATAATTTAAAGACACCTTTTTTCTCTGTGTGTGCAAATGTGTG
TTTGTGATCCATTTTTTTAGGACACCTGTTTACTAGCTAGCTTTACAATATGCCAAAAAC
AGATTTTTCCCTGACCCAAGCCGTGGTTCACCCTCTTTTCCCCCCATGCTTTGTGCCCTA
GTTTATAACAAAGGAATGATGATGATTTAAGAAGTAGTTCTGTATCTTCAGTATCTTGGT
CTTCCAGAACCCTCTGGTTGGGAAGGGGATCATCTTTTACTGGTCATTTCCCTTTGGAGT
GTAGCTACTTTAACAGACCGAACGAACCTCATTGGCCAAGGAAACAGCAGAGGTGTTACA
GCCTGGCGGTGCCTGTGGCACCATAAGCATCTGGTTTGGCAGGTTTGGTAGTTGTCCTCT
TATGCAGTGCCTCGAGATGGAAGGACTCCATTGCACATCTAGTGGCTTTCACCGTGACAC
AGCACACAGACTTATCATACAAAAGCTGATAATTCTGGTGCCCGAAAGCCACTGGCTTAC
ATGCCTCATATCATGACTAATGCTTTGTTATTACATGTAAGAGATTCTATTTATTTTTAT
TTAAGGCAGAACACCGAAGATAGTTCTTTTTCAATATAGTACAAATTTGTTGTAATAAAA
ACCATGCACATGCAAGATTTTTTTAAGTTTGACACCATTCCCTCTGGTTCCCAATGGACT
ATTTGCCATGTCTACACAACTCCACAAAATCCCCATCGTTGGAAACATCTGGATGTTTTG
CACTACATGGGAGAAAGGTCCAGAAACAATTTGGGTTTTGTTTGTAACTTTCCATTTGGA
TGTCTGGCGTTGCATAGACACCATCCACAGGTGGAACAGATGCTTGGCAAAAACACCTGT
CTGCTTTCTAAGCCAGTGAGGTTGAGGTGAGAGGTTTGCCAGAGTTTGTCTACCTCTGGG
ACAGAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               234-390, + strand, RNAz p=0.777825
               

               
               1824-1932, - strand, RNAz p=0.672591

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               234-390, + strand, RNAz p=0.777825
               

               
               1824-1932, - strand, RNAz p=0.672591

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of BC010607, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC010607, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               11-1932, gnl|bosTau2|chr21 (1832539-1830641)
               

               
               11-1932, gnl|Hg17|chr15 (97322970-97324885)
               

               
               11-1932, gnl|Mm7|chr7 (64087231-64089234)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-1932, gnl|bosTau2|chr21 (1832539-1830641)
               

               
               11-1932, gnl|Hg17|chr15 (97322970-97324885)
               

               
               11-1932, gnl|Mm7|chr7 (64087231-64089234)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

Help | Less info


               
               sug (0.381874)
               

               
               gul (0.355177)
               

               
               lnt (0.284616)
               

               
               aor (0.195274)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.381874)
               

               
               gul (0.355177)
               

               
               lnt (0.284616)
               

               
               aor (0.195274)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	234-390, + strand, RNAz p=0.777825
	1824-1932, - strand, RNAz p=0.672591

	11-1932, gnl\|bosTau2\|chr21 (1832539-1830641)
	11-1932, gnl\|Hg17\|chr15 (97322970-97324885)
	11-1932, gnl\|Mm7\|chr7 (64087231-64089234)

	sug (0.381874)
	gul (0.355177)
	lnt (0.284616)
	aor (0.195274)
	csp (0.161186)
	mga (0.160205)
	fat (0.147427)
	ski (0.146735)
	pla (0.133672)
	nmm (0.132802)
	bla (0.124347)
	eru (0.120048)
	cty (0.10408)
	eje (0.0988338)