Non-Coding RNA Search

Ss1.1-Pig4-TMW8034K10.5

Sequence:


               
               AGTGAATGTGCTTTCTAGTTGTCAGGAATGCTGAGGGAATTAACACTTTGACTCTTAAAT
GTGATGCTGGTTTGAAGATTCCCTTATAGCAGAAAGGAGAGGGGCACATATAATTTGTAT
GGCTATTGCTTCCTCTTTGGTTTTATGTGTCTTAGGATTTGGAAGTGGTTCAATTCCAAT
GCTGGTTTGAAGATTTAGCATCCTTAGTGATTGAAACCATATCTTATAATTCAATAAAAA
AGTTAAAAAACAAACAGGGAAAACAAAAAAAAAACCTCTGATTTTCCCAAACTTAACCAG
TGTGACTAGAGGCTGTGTTTCTGCATTAAAACATACGTTTCAGGCTTTGTGGTCCTGATC
AAGGTCCTCATTAAATTGGAGTCCACCCTTAGGTGCTTTTCCCTTCTGTGACTGGCAAAT
AACACATACTTTTAAAAGTTACTTGGGGAATTTTTCTTTTCTTAGTTGGGTGCAGCTTGA
TTGTAACATATTCATGCTGCACATAAGTAGCACCCTTATCTTAAATAACTATCTTCTCGA
CATGACCTGTTTAACCCAAATAAGGGCAGTGATCGTTTTCTTATATCATTGTTCCCTAAT
CATTTCATCTCCTCCTAGTATTGCCCAGTCAAGTCCCCTCCACAAAATAAAAAAGTTTCT
ACCTTCTGGCTCATTTAATAATGACTGCAATCTCTACCTGCAAATGGCGCTTCCAGTAAC
TGTCTTCAGCAATCCACATTTGCACTCGGACTGGAACAAAAAAATAAGCTTAATTGCCAA
GAGAGCTGCAACTGAGTTCAATACGACTTCTTGGTGCTAGCTGGCCATCTTTTTTTTTGA
CGCAAAGTTGGGACACACTATCAGAGAAGATTTTTTGTTGATGTGCTGTTCGAAACGAAT
TCTAAAGGAAAAGTTGCTCATTTCTTTTTCAGAGAATATCCCTTTAAACCTCTTTAATCT
TGTCCTCTTCTAGAATTCATTATAACCCCAAAGTGTAACTATTTGGAAGTTCCCCTGACA
AGCTGTTATACATCTCCGGTAAATCCTGCTGAATGTTAGGGATATTCAGAGCTTTCATAC
CTCATCATGTTATTTAAGCAGCCAACTTATGTGGCCTGATTTAAACTTTAAAAAATCCAC
TTCATTCAAAGTAGAAAGATACAAAGACAAAGGACATTTATCAGCCAAGCGTGTGACGCA
GTCTTCGAATCTAGTCTGTAGTTGTGTCTGTGCTCTGGATGGATACCGTCTGTTGTCTGT
TATTGATGGAGCAGCCACTGCAAAACTAGTCGACTCCCATCTATATAACTGTTACTTTTT
CTAGTGCTGCTTTGTGCTGAAAGAACATTTTAGTTTACTGCACTTGACCTGTAAAAGACT
TTGATTCTTGTAATTTTAGGGACAAATTAGGTGGTTAATTTAAAGAAAAACTTTCATTGT
TGCCTTTACATCACATTAAAATATAATTCTTTTGGAAGGTAATAGAAGCACTGATTCATA
GTAAAAATCTTGTTTTTAGCTTTGGCTTTTTTTGTGGCTGAGTTTTTTTAAATTGTAAAT
TACTGGTAACATTTCTCTAGGATGTTTTAAATCATGTACCTATTGGATAATTTAAAAAAA
AAGTACCGAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGAATGTGCTTTCTAGTTGTCAGGAATGCTGAGGGAATTAACACTTTGACTCTTAAAT
GTGATGCTGGTTTGAAGATTCCCTTATAGCAGAAAGGAGAGGGGCACATATAATTTGTAT
GGCTATTGCTTCCTCTTTGGTTTTATGTGTCTTAGGATTTGGAAGTGGTTCAATTCCAAT
GCTGGTTTGAAGATTTAGCATCCTTAGTGATTGAAACCATATCTTATAATTCAATAAAAA
AGTTAAAAAACAAACAGGGAAAACAAAAAAAAAACCTCTGATTTTCCCAAACTTAACCAG
TGTGACTAGAGGCTGTGTTTCTGCATTAAAACATACGTTTCAGGCTTTGTGGTCCTGATC
AAGGTCCTCATTAAATTGGAGTCCACCCTTAGGTGCTTTTCCCTTCTGTGACTGGCAAAT
AACACATACTTTTAAAAGTTACTTGGGGAATTTTTCTTTTCTTAGTTGGGTGCAGCTTGA
TTGTAACATATTCATGCTGCACATAAGTAGCACCCTTATCTTAAATAACTATCTTCTCGA
CATGACCTGTTTAACCCAAATAAGGGCAGTGATCGTTTTCTTATATCATTGTTCCCTAAT
CATTTCATCTCCTCCTAGTATTGCCCAGTCAAGTCCCCTCCACAAAATAAAAAAGTTTCT
ACCTTCTGGCTCATTTAATAATGACTGCAATCTCTACCTGCAAATGGCGCTTCCAGTAAC
TGTCTTCAGCAATCCACATTTGCACTCGGACTGGAACAAAAAAATAAGCTTAATTGCCAA
GAGAGCTGCAACTGAGTTCAATACGACTTCTTGGTGCTAGCTGGCCATCTTTTTTTTTGA
CGCAAAGTTGGGACACACTATCAGAGAAGATTTTTTGTTGATGTGCTGTTCGAAACGAAT
TCTAAAGGAAAAGTTGCTCATTTCTTTTTCAGAGAATATCCCTTTAAACCTCTTTAATCT
TGTCCTCTTCTAGAATTCATTATAACCCCAAAGTGTAACTATTTGGAAGTTCCCCTGACA
AGCTGTTATACATCTCCGGTAAATCCTGCTGAATGTTAGGGATATTCAGAGCTTTCATAC
CTCATCATGTTATTTAAGCAGCCAACTTATGTGGCCTGATTTAAACTTTAAAAAATCCAC
TTCATTCAAAGTAGAAAGATACAAAGACAAAGGACATTTATCAGCCAAGCGTGTGACGCA
GTCTTCGAATCTAGTCTGTAGTTGTGTCTGTGCTCTGGATGGATACCGTCTGTTGTCTGT
TATTGATGGAGCAGCCACTGCAAAACTAGTCGACTCCCATCTATATAACTGTTACTTTTT
CTAGTGCTGCTTTGTGCTGAAAGAACATTTTAGTTTACTGCACTTGACCTGTAAAAGACT
TTGATTCTTGTAATTTTAGGGACAAATTAGGTGGTTAATTTAAAGAAAAACTTTCATTGT
TGCCTTTACATCACATTAAAATATAATTCTTTTGGAAGGTAATAGAAGCACTGATTCATA
GTAAAAATCTTGTTTTTAGCTTTGGCTTTTTTTGTGGCTGAGTTTTTTTAAATTGTAAAT
TACTGGTAACATTTCTCTAGGATGTTTTAAATCATGTACCTATTGGATAATTTAAAAAAA
AAGTACCGAAGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               394-536, - strand, RNAz p=0.999429
               

               
               873-981, + strand, RNAz p=0.74214

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               394-536, - strand, RNAz p=0.999429
               

               
               873-981, + strand, RNAz p=0.74214

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1619, gnl|bosTau2|chr1 (34664934-34666529)
               

               
               1-1619, gnl|Hg17|chr3 (123627892-123626262)
               

               
               1-1619, gnl|Mm7|chr16 (35708736-35710331)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1619, gnl|bosTau2|chr1 (34664934-34666529)
               

               
               1-1619, gnl|Hg17|chr3 (123627892-123626262)
               

               
               1-1619, gnl|Mm7|chr16 (35708736-35710331)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

Help | Less info


               
               bfe (0.449573)
               

               
               liv (0.438853)
               

               
               vin (0.332557)
               

               
               cte (0.29274)
               

               
               lin (0.291206)
               

               
               cbe (0.239234)
               

               
               pan (0.23596)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.449573)
               

               
               liv (0.438853)
               

               
               vin (0.332557)
               

               
               cte (0.29274)
               

               
               lin (0.291206)
               

               
               cbe (0.239234)
               

               
               pan (0.23596)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	394-536, - strand, RNAz p=0.999429
	873-981, + strand, RNAz p=0.74214

	1-1619, gnl\|bosTau2\|chr1 (34664934-34666529)
	1-1619, gnl\|Hg17\|chr3 (123627892-123626262)
	1-1619, gnl\|Mm7\|chr16 (35708736-35710331)

	bfe (0.449573)
	liv (0.438853)
	vin (0.332557)
	cte (0.29274)
	lin (0.291206)
	cbe (0.239234)
	pan (0.23596)
	mas (0.210305)
	fli (0.202881)
	aor (0.195274)
	nlu (0.191681)
	eye (0.170503)
	tbr (0.154178)
	lun (0.150489)
	isp (0.150376)
	ski (0.146735)
	ssp (0.13552)
	ste (0.135208)
	ova (0.129132)
	ret (0.128733)
	sug (0.127291)
	eru (0.120048)
	nbm (0.0993246)
	ldo (0.0970026)