Non-Coding RNA Search

Ss1.1-Pig4-TMW8034K21.3

Sequence:


               
               ATGTAATTTTAGGGAATTATGATCACACATGTCTAGTTGCCTTCACCCCAGACTTTCAGT
GCCAGTGTGTGTGTATGTACATACGTGGTAAAGACTTCATGGACACATTGTCCCTCTCCC
GCTTCAGATGTCGCCTAGAATCATAATTGTATTTCTTCCATTAAAGCACGTGAGAGTGGC
GATAACAGGAGGATTTGTGATTTTTCTCTTGGCCTGATAACAATGGATGTTTATTGAGTT
CTCACTACATTTTGAGTATTTTATACATTAACTCTCTGAAGCCTCACAACAATCCTGCAA
AATTTATCCCCATTTTACACTAAGAAAACTGAGGTTTAATGAGGTTAAGTAACTTGCCAA
ACCACCACATCCAGGTGTCACAATCAGATTTGCCATCGCAAAGCTCATGATCTAAAGCAC
TAAGTCAAAATACTACGACCAACATCACAATATGACCACTTCTCTAGTCCTTGAGATTTT
TCTGTGGTAAATGGTAACAATTATCTTCTCAAATTTTTCAGTTTTCTGGTTAAATTACAC
TAAAGTGATGGAACGTATTTTTATCATGACAGAAATTGGAGGGGAAATGGGGTTTATCAG
CATTTTAGGCTGCTTTGGTGGGTGTCCAGCCTTTGATGGGACTATTCATTTTGGTGAGCA
TGAACTCTCCACTTCTTGAGAATGAAAATAGAAAGTGAGGGGAGCCTAAAGGTCATCTAT
ACAATGTCCTTTTCTACAGGTGTTGTCAATCCATGAAGTTAGAGTGACTTACAGAAGATC
CCACATTTGCGTGTAGCAAAGCAAGGTCCAGAAACCATGCCCTCAGCGGCTCTTAAATAA
ACAACTGCATCCTGCCTAAAAGAAGTGTGAGCTTGAATTTGATCAATGACAACATTCCAT
CTGGGTGATCAGGGGCGGCATGGAACCTAGTAGACTGCTCAGTTTTGCACCTCTCTGGCT
TCTCACCTCAGCGTGAAAAATAGCTATAGCTCTGGGCTGACATCTTTAGATGCAGGAATT
GTCAGTGGTCCATCCACACAGAACATACAATGGCCCAAGTTATGTGTACAGTGTCTTCAA
TGATTTGGAATTCTCAGTTCACCTAAACAGATCTTCTCATGAGCATTTCCTGAACCAATT
TTATGCACAGTATATATTAGAGCTTCCACATCAAGATTTAAACACGACTGTTTCGCTAGT
TCTTATGTTTTTGACGGTATCAGTGGTTCTTTGCTATTTTAACCTTCACTTATCCAGGTG
ACTAACTCAAGAATACTTCAGCAATAAAAAGCTGGAATTGAGGAAACCTTATTCTTTACC
AGCCCCTTCGCCTTCAGTTGGCATTCAGTCATGCCAAATAGAGGGGTCAGCTGGAGAACT
CAAATTTGAAATGCAATTTTGTCTGAAGTCCGTTAAGCTGTGTTTACTTAAGGGCAAGCT
TCTAGATGTTTGAAAGTACCTGAATATTTAACTGTTGTAAATTTCCAGTTAGATATCTGG
CATTGTTGCACTTGGACCTGCTGGTGGCTCAGGTCATCCTATTTTCAAAATGATCATTGG
CCATGTGTCACACAATTCTCATTAAGTGAGTTCATAGAGTTTTTTAAGGTCAAGCCAAGC
ACAAAATGTGACTTTGTTGACATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTAATTTTAGGGAATTATGATCACACATGTCTAGTTGCCTTCACCCCAGACTTTCAGT
GCCAGTGTGTGTGTATGTACATACGTGGTAAAGACTTCATGGACACATTGTCCCTCTCCC
GCTTCAGATGTCGCCTAGAATCATAATTGTATTTCTTCCATTAAAGCACGTGAGAGTGGC
GATAACAGGAGGATTTGTGATTTTTCTCTTGGCCTGATAACAATGGATGTTTATTGAGTT
CTCACTACATTTTGAGTATTTTATACATTAACTCTCTGAAGCCTCACAACAATCCTGCAA
AATTTATCCCCATTTTACACTAAGAAAACTGAGGTTTAATGAGGTTAAGTAACTTGCCAA
ACCACCACATCCAGGTGTCACAATCAGATTTGCCATCGCAAAGCTCATGATCTAAAGCAC
TAAGTCAAAATACTACGACCAACATCACAATATGACCACTTCTCTAGTCCTTGAGATTTT
TCTGTGGTAAATGGTAACAATTATCTTCTCAAATTTTTCAGTTTTCTGGTTAAATTACAC
TAAAGTGATGGAACGTATTTTTATCATGACAGAAATTGGAGGGGAAATGGGGTTTATCAG
CATTTTAGGCTGCTTTGGTGGGTGTCCAGCCTTTGATGGGACTATTCATTTTGGTGAGCA
TGAACTCTCCACTTCTTGAGAATGAAAATAGAAAGTGAGGGGAGCCTAAAGGTCATCTAT
ACAATGTCCTTTTCTACAGGTGTTGTCAATCCATGAAGTTAGAGTGACTTACAGAAGATC
CCACATTTGCGTGTAGCAAAGCAAGGTCCAGAAACCATGCCCTCAGCGGCTCTTAAATAA
ACAACTGCATCCTGCCTAAAAGAAGTGTGAGCTTGAATTTGATCAATGACAACATTCCAT
CTGGGTGATCAGGGGCGGCATGGAACCTAGTAGACTGCTCAGTTTTGCACCTCTCTGGCT
TCTCACCTCAGCGTGAAAAATAGCTATAGCTCTGGGCTGACATCTTTAGATGCAGGAATT
GTCAGTGGTCCATCCACACAGAACATACAATGGCCCAAGTTATGTGTACAGTGTCTTCAA
TGATTTGGAATTCTCAGTTCACCTAAACAGATCTTCTCATGAGCATTTCCTGAACCAATT
TTATGCACAGTATATATTAGAGCTTCCACATCAAGATTTAAACACGACTGTTTCGCTAGT
TCTTATGTTTTTGACGGTATCAGTGGTTCTTTGCTATTTTAACCTTCACTTATCCAGGTG
ACTAACTCAAGAATACTTCAGCAATAAAAAGCTGGAATTGAGGAAACCTTATTCTTTACC
AGCCCCTTCGCCTTCAGTTGGCATTCAGTCATGCCAAATAGAGGGGTCAGCTGGAGAACT
CAAATTTGAAATGCAATTTTGTCTGAAGTCCGTTAAGCTGTGTTTACTTAAGGGCAAGCT
TCTAGATGTTTGAAAGTACCTGAATATTTAACTGTTGTAAATTTCCAGTTAGATATCTGG
CATTGTTGCACTTGGACCTGCTGGTGGCTCAGGTCATCCTATTTTCAAAATGATCATTGG
CCATGTGTCACACAATTCTCATTAAGTGAGTTCATAGAGTTTTTTAAGGTCAAGCCAAGC
ACAAAATGTGACTTTGTTGACATT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               3-1644, gnl|bosTau2|chr15 (20071854-20073540)
               

               
               3-1644, gnl|Hg17|chr11 (121466774-121465082)
               

               
               3-1644, gnl|Mm7|chr9 (41521528-41523232)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1644, gnl|bosTau2|chr15 (20071854-20073540)
               

               
               3-1644, gnl|Hg17|chr11 (121466774-121465082)
               

               
               3-1644, gnl|Mm7|chr9 (41521528-41523232)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               bla (0.621736)
               

               
               gul (0.532765)
               

               
               fcc (0.197785)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.621736)
               

               
               gul (0.532765)
               

               
               fcc (0.197785)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

	3-1644, gnl\|bosTau2\|chr15 (20071854-20073540)
	3-1644, gnl\|Hg17\|chr11 (121466774-121465082)
	3-1644, gnl\|Mm7\|chr9 (41521528-41523232)

	bla (0.621736)
	gul (0.532765)
	fcc (0.197785)
	rec (0.17307)
	fco (0.157208)
	ski (0.146735)
	liv (0.146284)
	csk (0.140746)
	nmm (0.132802)
	eru (0.120048)
	cty (0.10408)